Factsheet for Bra026295.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000736.1-P
Bra003068.1-P
Bra003462.1-P
Bra004548.1-P
Bra010389.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra019270.1-P
Bra022643.1-P
Bra023876.1-P
Bra025394.1-P
Bra026295.1-P
Bra029079.1-P
Bra036215.1-P
Bra040839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27950.1	Bra012352.1-P	AT1G22985.1	21705390
AT4G27950.1	Bra016367.1-P	AT1G22985.1	21705390
AT4G27950.1	Bra004548.1-P	AT2G46310.1	21705390
AT4G27950.1	Bra023876.1-P	AT3G21510.1	21705390
AT4G27950.1	Bra025394.1-P	AT3G29350.1	21705390
AT4G27950.1	Bra036215.1-P	AT3G29350.1	21705390
AT4G27950.1	Bra003462.1-P	AT3G61630.1	21705390
AT4G27950.1	Bra000736.1-P	AT4G11140.1	21705390
AT4G27950.1	Bra013730.1-P	AT4G23750.1	21705390
AT4G27950.1	Bra019270.1-P	AT4G23750.1	21705390
AT4G27950.1	Bra010389.1-P	AT4G27950.1	21705390
AT4G27950.1	Bra026295.1-P	AT4G27950.1	21705390
AT4G27950.1	Bra040839.1-P	AT4G27950.1	21705390
AT4G27950.1	Bra003068.1-P	AT5G53290.1	21705390
AT4G27950.1	Bra022643.1-P	AT5G53290.1	21705390
AT4G27950.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71170	Canola	nucleus	97.92	97.92
CDY71485	Canola	nucleus	94.96	94.96
Bra040839.1-P	Field mustard	nucleus	71.22	73.85
Bra010389.1-P	Field mustard	nucleus	70.62	72.56
AT4G27950.1	Thale cress	nucleus	69.14	69.55
Bra029079.1-P	Field mustard	nucleus	48.07	47.23
Bra022643.1-P	Field mustard	nucleus	48.96	46.88
Bra003068.1-P	Field mustard	nucleus	49.85	46.15
Bra012352.1-P	Field mustard	nucleus	18.69	42.86
Bra007963.1-P	Field mustard	nucleus	21.07	42.52
Bra016367.1-P	Field mustard	nucleus	19.88	42.41
Bra003936.1-P	Field mustard	nucleus	20.47	41.82
Bra003462.1-P	Field mustard	nucleus	29.97	35.69
Bra019270.1-P	Field mustard	nucleus	31.45	34.19
Bra004548.1-P	Field mustard	nucleus	26.71	33.46
Bra013730.1-P	Field mustard	nucleus	30.56	32.7
Bra000736.1-P	Field mustard	nucleus	25.52	31.5
Bra033923.1-P	Field mustard	nucleus	20.47	21.84
Bra036360.1-P	Field mustard	nucleus	17.21	20.64
Bra004033.1-P	Field mustard	nucleus	19.29	20.5
Bra004318.1-P	Field mustard	nucleus	18.4	20.39
Bra025170.1-P	Field mustard	nucleus	18.1	19.18
Bra024743.1-P	Field mustard	plastid	17.21	17.37

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra026295	EnsemblPlants:Bra026295.1
EnsemblPlants:Bra026295.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EBY6	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF40	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002543F27	SEG:seg

Description

AT4G27950 (E=2e-100) CRF4 | CRF4 (CYTOKININ RESPONSE FACTOR 4); DNA binding / transcription factor

Coordinates

chrA01:-:10173442..10174455

Molecular Weight (calculated)

38228.5 Da

IEP (calculated)

4.705

GRAVY (calculated)

-0.731

Length

337 amino acids

Sequence
(BLAST)

001: MMMDEYMDYR PVKYTEHKTV IKKYTKKLSV ENKKKKKISS GRDSAKLVRV CVTDHDATDS SSDEEEFLFP RRRVKRLINE IRVEPSPSDE PSAASNKNGK
101: SLAVEPPLKK VSVSGDDQSE RKFRGVRRRP WGKYAAEIRD PEQRRRIWLG TFSTAEEAAL VYDNAAIRLR GPDALTNFAV PPEPKPEQEP ESKSSVSVSS
201: ASESMDYSNH HLSSPTSVLN YGVSEPIDEP VKPVKQEFIK PEPVTWPFEE GNGNDIDGSF PLDIPFLENY FNESSPDISI FDQSMSHIQS PENGFFDDLM
301: LFDHNNMGGE NYCSDIEEIG SMFNSVDDFF ISDFLVV

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.