Factsheet for Bra033923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44887	Canola	nucleus	99.05	99.05
CDY65135	Canola	nucleus	94.3	95.21
Bra004033.1-P	Field mustard	nucleus	61.39	61.2
Bra004318.1-P	Field mustard	nucleus	55.7	57.89
AT1G68550.2	Thale cress	nucleus	57.28	55.86
Bra036360.1-P	Field mustard	nucleus	34.18	38.43
Bra024743.1-P	Field mustard	plastid	38.92	36.83
Bra025170.1-P	Field mustard	nucleus	37.03	36.79
Bra012352.1-P	Field mustard	nucleus	15.51	33.33
VIT_01s0011g03470.t01	Wine grape	nucleus	32.28	31.88
Bra016367.1-P	Field mustard	nucleus	15.51	31.01
KRH43430	Soybean	nucleus	32.91	30.77
KRH35957	Soybean	nucleus	32.91	29.3
Bra003936.1-P	Field mustard	nucleus	15.19	29.09
Bra007963.1-P	Field mustard	nucleus	15.19	28.74
Solyc05g009450.1.1	Tomato	nucleus	31.01	28.74
KRH45262	Soybean	nucleus	32.28	28.02
KRG90812	Soybean	nucleus	32.59	27.99
PGSC0003DMT400037698	Potato	nucleus	30.06	27.62
GSMUA_Achr4P06840_001	Banana	nucleus	21.84	27.17
GSMUA_Achr9P19330_001	Banana	mitochondrion	20.89	26.61
KRH75373	Soybean	nucleus, plastid	30.7	26.15
GSMUA_Achr4P13800_001	Banana	nucleus	22.47	26.1
Solyc04g007180.1.1	Tomato	nucleus	27.22	25.67
KRH04558	Soybean	nucleus	29.11	24.8
Bra003462.1-P	Field mustard	nucleus	22.15	24.73
PGSC0003DMT400041053	Potato	nucleus	27.22	24.29
EER98690	Sorghum	nucleus	21.52	24.11
GSMUA_Achr1P23090_001	Banana	nucleus	22.15	24.05
Bra004548.1-P	Field mustard	nucleus	19.94	23.42
Os09t0309700-01	Rice	nucleus	22.78	22.64
Bra019270.1-P	Field mustard	nucleus	22.15	22.58
OQU89260	Sorghum	nucleus	20.57	22.57
TraesCS5B01G178600.1	Wheat	nucleus	21.2	21.68
HORVU5Hr1G055190.2	Barley	nucleus	21.2	21.68
TraesCS5A01G180800.1	Wheat	nucleus	21.2	21.61
Bra013730.1-P	Field mustard	nucleus	21.52	21.59
TraesCS5D01G185300.1	Wheat	nucleus	20.89	21.29
Bra000736.1-P	Field mustard	nucleus	18.35	21.25
Bra029079.1-P	Field mustard	nucleus	22.47	20.7
Bra040839.1-P	Field mustard	nucleus	21.2	20.62
Bra026295.1-P	Field mustard	nucleus	21.84	20.47
Bra010389.1-P	Field mustard	nucleus	21.2	20.43
Bra003068.1-P	Field mustard	nucleus	22.78	19.78
Bra022643.1-P	Field mustard	nucleus	21.2	19.03
Zm00001d020043_P001	Maize	plastid	21.84	17.97
GSMUA_Achr10P...	Banana	vacuole	22.78	12.2

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra033923	EnsemblPlants:Bra033923.1
EnsemblPlants:Bra033923.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EYN1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF21	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00025462D4	SEG:seg

Description

AT1G68550 (E=3e-053) | AP2 domain-containing transcription factor, putative

Coordinates

chrA02:-:10922094..10923044

Molecular Weight (calculated)

34722.4 Da

IEP (calculated)

4.386

GRAVY (calculated)

-0.533

Length

316 amino acids

Sequence
(BLAST)

001: MVAIRKQRVT KKPKSDNSLS SDPQETQVLR KVRIIVADPY ATDDSSSDEE EMIPRPRPVK RIVREINFPL HSDSASPDST VTMSKRAGAA RFAASRAKLL
101: NKPVGVRQRK WGKWAAEIRH PILKTRRWLG TFLTLEDAHQ AYKKKRREYD ELLGIVDDPL PVSEDAKPEV SSSENSQCSG SSTTTSLEQD ASSSSAKEEV
201: MMKITTNDDD GVDLSEEVLF DFNFADLQIP EFIGDGGSMG GGGGGNDLGL DFDCFFTDDQ LDDFGLLDDI SGFEESGPSA LPDFDFADVE LELAGSSFLD
301: QTSPLNMTCS MKSFAA

Best Arabidopsis Sequence Match ( AT1G68550.1 )
(BLAST)

001: MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD DSSSDEEELK VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI
101: AVSASPAVPR KKPVGVRQRK WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK AYDAKKLEFD AIVAGNVSTT KRDVSSSETS QCSRSSPVVP VEQDDTSASA
201: LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ IPDFGFLAEE QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD
301: SSFGFLDQLA PINISCPLKS FAAS

Arabidopsis Description

ERF118Ethylene-responsive transcription factor ERF118 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.