Factsheet for VIT_01s0011g03470.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009450.1.1	Tomato	nucleus	45.0	42.23
PGSC0003DMT400037698	Potato	nucleus	44.38	41.28
KRH35957	Soybean	nucleus	45.31	40.85
KRG90812	Soybean	nucleus	43.75	38.04
KRH45262	Soybean	nucleus	43.12	37.91
Solyc04g007180.1.1	Tomato	nucleus	39.69	37.91
KRH43430	Soybean	nucleus	39.69	37.57
CDY42104	Canola	nucleus	20.62	36.87
CDX84990	Canola	nucleus	28.44	36.69
KRH75373	Soybean	nucleus, plastid	42.5	36.66
PGSC0003DMT400041053	Potato	nucleus	40.0	36.16
AT1G68550.2	Thale cress	nucleus	35.62	35.19
CDY07380	Canola	nucleus	33.75	34.29
Bra004033.1-P	Field mustard	nucleus	33.75	34.07
CDY04234	Canola	nucleus	33.44	33.75
Bra036360.1-P	Field mustard	nucleus	29.38	33.45
CDX83568	Canola	nucleus	32.5	33.23
CDY65135	Canola	nucleus	32.19	32.91
CDX96010	Canola	nucleus	31.25	32.89
CDY40978	Canola	nucleus	25.94	32.81
Bra004318.1-P	Field mustard	nucleus	30.94	32.57
CDY38591	Canola	nucleus	30.62	32.56
CDY13596	Canola	nucleus	32.19	32.49
Bra025170.1-P	Field mustard	nucleus	32.19	32.39
Bra033923.1-P	Field mustard	nucleus	31.88	32.28
CDY44887	Canola	nucleus	31.88	32.28
AT3G25890.2	Thale cress	nucleus	32.5	31.33
KRH04558	Soybean	nucleus	35.94	31.0
GSMUA_Achr4P06840_001	Banana	nucleus	23.75	29.92
GSMUA_Achr4P13800_001	Banana	nucleus	25.0	29.41
CDX99741	Canola	nucleus	28.12	28.57
Bra024743.1-P	Field mustard	plastid	29.69	28.44
AT1G25470.1	Thale cress	nucleus	25.0	27.87
GSMUA_Achr9P19330_001	Banana	mitochondrion	21.25	27.42
VIT_06s0004g08190.t01	Wine grape	nucleus	22.19	24.91
GSMUA_Achr1P23090_001	Banana	nucleus	22.19	24.4
Os09t0309700-01	Rice	nucleus	22.19	22.33
VIT_16s0050g02400.t01	Wine grape	nucleus	23.12	21.7
EER98690	Sorghum	nucleus	18.75	21.28
TraesCS5B01G178600.1	Wheat	nucleus	19.69	20.39
TraesCS5A01G180800.1	Wheat	nucleus	19.38	20.0
VIT_15s0046g01390.t01	Wine grape	nucleus	19.38	19.75
HORVU5Hr1G055190.2	Barley	nucleus	19.06	19.74
TraesCS5D01G185300.1	Wheat	nucleus	19.06	19.68
OQU89260	Sorghum	nucleus	17.5	19.44
Zm00001d020043_P001	Maize	plastid	20.31	16.93
GSMUA_Achr10P...	Banana	vacuole	24.69	13.39

Protein Annotations

EntrezGene:100256010	wikigene:100256010	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB50916	ProteinID:CCB50916.1	InterPro:DNA-bd_dom_sf	UniProt:F6HEX1	EMBL:FN595752
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EntrezGene:LOC100256010	wikigene:LOC100256010	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF61	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00015C7E35	ArrayExpress:VIT_01s0011g03470
EnsemblPlantsGene:VIT_01s0011g03470	EnsemblPlants:VIT_01s0011g03470.t01	unigene:Vvi.25797	RefSeq:XP_002279257	RefSeq:XP_002279257.1	RefSeq:XP_010647696.1
RefSeq:XP_010647698.1	RefSeq:XP_010647701.1	RefSeq:XP_010647706.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:3142869..3144296

Molecular Weight (calculated)

35781.3 Da

IEP (calculated)

4.659

GRAVY (calculated)

-0.858

Length

320 amino acids

Sequence
(BLAST)

001: MPEPRRQPMI QDMPFKRAKE ICSDFKMRKI RVICYDPEAT DSSSSEDEGG ISKREKRGKR IVREINLPVA GSPQSNAIET ESSCQDSNNG GKNPKKRFLR
101: KPPSSKYRGV RQRKWGKWAA EIRDPFRGVR VWLGTYNTPE EAAKAYESKR LEFEAMAASA NKSQNVSSSV AVSQSQSHNP AVSDDSDSLL SHTSPSSVLE
201: LETSTSHYNG GGHGTDTTKE GVGTNLIHAN GAEQQKPISD FAEEPLMAPP IGQELNMEAE FESFFDDNNW GRILDDFNCL DDLRIFGFDN EEPSDLPDFD
301: FDLGNDEFAW MDEPLNISCP

Best Arabidopsis Sequence Match ( AT1G68550.1 )
(BLAST)

001: MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD DSSSDEEELK VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI
101: AVSASPAVPR KKPVGVRQRK WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK AYDAKKLEFD AIVAGNVSTT KRDVSSSETS QCSRSSPVVP VEQDDTSASA
201: LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ IPDFGFLAEE QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD
301: SSFGFLDQLA PINISCPLKS FAAS

Arabidopsis Description

ERF118Ethylene-responsive transcription factor ERF118 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.