Factsheet for Bra019270.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000736.1-P
Bra003068.1-P
Bra003462.1-P
Bra004548.1-P
Bra010389.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra016526.1-P
Bra019270.1-P
Bra022643.1-P
Bra023876.1-P
Bra025708.1-P
Bra026295.1-P
Bra029079.1-P
Bra040839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23750.1	Bra016526.1-P	AT1G19050.1	21705390
AT4G23750.1	Bra025708.1-P	AT1G19050.1	21705390
AT4G23750.1	Bra012352.1-P	AT1G22985.1	21705390
AT4G23750.1	Bra016367.1-P	AT1G22985.1	21705390
AT4G23750.1	Bra004548.1-P	AT2G46310.1	21705390
AT4G23750.1	Bra023876.1-P	AT3G21510.1	21705390
AT4G23750.1	Bra003462.1-P	AT3G61630.1	21705390
AT4G23750.1	Bra000736.1-P	AT4G11140.1	21705390
AT4G23750.1	Bra013730.1-P	AT4G23750.1	21705390
AT4G23750.1	Bra019270.1-P	AT4G23750.1	21705390
AT4G23750.1	Bra010389.1-P	AT4G27950.1	21705390
AT4G23750.1	Bra026295.1-P	AT4G27950.1	21705390
AT4G23750.1	Bra040839.1-P	AT4G27950.1	21705390
AT4G23750.1	Bra003068.1-P	AT5G53290.1	21705390
AT4G23750.1	Bra022643.1-P	AT5G53290.1	21705390
AT4G23750.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10965	Canola	nucleus	92.26	96.62
CDX94215	Canola	nucleus	93.87	92.68
Bra013730.1-P	Field mustard	nucleus	79.68	78.41
AT4G23750.1	Thale cress	nucleus	77.42	69.97
Bra000736.1-P	Field mustard	nucleus	47.74	54.21
Bra016367.1-P	Field mustard	nucleus	24.52	48.1
Bra012352.1-P	Field mustard	nucleus	22.26	46.94
Bra007963.1-P	Field mustard	nucleus	24.84	46.11
Bra003936.1-P	Field mustard	nucleus	24.52	46.06
KRG92510	Soybean	nucleus	27.74	44.56
KRH41287	Soybean	nucleus	39.03	41.3
KRH27859	Soybean	nucleus	38.06	40.83
KRH77624	Soybean	nucleus	37.74	39.26
PGSC0003DMT400032058	Potato	nucleus	40.97	37.57
Solyc08g081960.1.1	Tomato	nucleus	40.65	37.17
KRH60010	Soybean	nucleus	40.0	37.13
Bra003068.1-P	Field mustard	nucleus	39.35	33.52
Bra004548.1-P	Field mustard	nucleus	29.03	33.46
Bra029079.1-P	Field mustard	nucleus	36.45	32.94
Bra022643.1-P	Field mustard	nucleus	36.13	31.82
Bra003462.1-P	Field mustard	nucleus	29.03	31.8
Bra040839.1-P	Field mustard	nucleus	33.23	31.69
Bra026295.1-P	Field mustard	nucleus	34.19	31.45
Bra010389.1-P	Field mustard	nucleus	31.29	29.57
Bra036360.1-P	Field mustard	nucleus	21.29	23.49
Bra004033.1-P	Field mustard	nucleus	23.23	22.71
Bra004318.1-P	Field mustard	nucleus	21.94	22.37
Bra033923.1-P	Field mustard	nucleus	22.58	22.15
Bra025170.1-P	Field mustard	nucleus	22.26	21.7
Bra024743.1-P	Field mustard	plastid	20.97	19.46

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra019270	EnsemblPlants:Bra019270.1
EnsemblPlants:Bra019270.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DRX7	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002540F5A	SEG:seg

Description

AT4G23750 (E=3e-055) CRF2 | CRF2 (CYTOKININ RESPONSE FACTOR 2); DNA binding / transcription factor

Coordinates

chrA03:+:25341708..25342640

Molecular Weight (calculated)

34495.1 Da

IEP (calculated)

5.287

GRAVY (calculated)

-0.558

Length

310 amino acids

Sequence
(BLAST)

001: MEPEKNLVLP PNIKFTEHKT NTTRTVPGFN NHHLQHPRII RISVTDPDAT DSSSDDDEEE ETHQRFASKR RRIKKFVNEV VLDSGAASTG SSTQIEPKRR
101: RRKRAVIVKP EPASAPPEKK YRGVRQRPWG KWAAEIRDPL RRVRLWLGTF NTAEEAALVY DSAAIQLRGP DALTNFSVPP PSPVEKKAKI KDDVASSSTS
201: SDILRSPVSV LRSPFTVDET SAVIVKEEPS ATTVSETFSD FSAPLFADDD LFDFRSDFLA GDLFGEDLFA DTTCTGMNFG FDFGSGLSSW HVEDHFQDIG
301: DLFGSDPLAV

Best Arabidopsis Sequence Match ( AT4G23750.1 )
(BLAST)

001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV

Arabidopsis Description

CRF2Ethylene-responsive transcription factor CRF2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.