Factsheet for Bra003462.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003068.1-P
Bra003462.1-P
Bra004548.1-P
Bra010389.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra019270.1-P
Bra022643.1-P
Bra023876.1-P
Bra023972.1-P
Bra025394.1-P
Bra026295.1-P
Bra029079.1-P
Bra036215.1-P
Bra040839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61630.1	Bra012352.1-P	AT1G22985.1	21705390
AT3G61630.1	Bra016367.1-P	AT1G22985.1	21705390
AT3G61630.1	Bra004548.1-P	AT2G46310.1	21705390
AT3G61630.1	Bra023876.1-P	AT3G21510.1	21705390
AT3G61630.1	Bra025394.1-P	AT3G29350.1	21705390
AT3G61630.1	Bra036215.1-P	AT3G29350.1	21705390
AT3G61630.1	Bra003462.1-P	AT3G61630.1	21705390
AT3G61630.1	Bra013730.1-P	AT4G23750.1	21705390
AT3G61630.1	Bra019270.1-P	AT4G23750.1	21705390
AT3G61630.1	Bra010389.1-P	AT4G27950.1	21705390
AT3G61630.1	Bra026295.1-P	AT4G27950.1	21705390
AT3G61630.1	Bra040839.1-P	AT4G27950.1	21705390
AT3G61630.1	Bra023972.1-P	AT4G31920.1	21705390
AT3G61630.1	Bra003068.1-P	AT5G53290.1	21705390
AT3G61630.1	Bra022643.1-P	AT5G53290.1	21705390
AT3G61630.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53906	Canola	nucleus	96.47	96.13
CDY52005	Canola	nucleus	95.41	94.08
AT3G61630.1	Thale cress	nucleus	63.25	56.83
Bra004548.1-P	Field mustard	nucleus	47.7	50.19
Bra012352.1-P	Field mustard	nucleus	21.91	42.18
Bra003936.1-P	Field mustard	nucleus	22.97	39.39
Bra007963.1-P	Field mustard	nucleus	22.97	38.92
Bra016367.1-P	Field mustard	nucleus	21.55	38.61
VIT_15s0046g01390.t01	Wine grape	nucleus	36.04	32.48
Bra026295.1-P	Field mustard	nucleus	35.69	29.97
Bra040839.1-P	Field mustard	nucleus	33.92	29.54
Bra010389.1-P	Field mustard	nucleus	33.92	29.27
Bra019270.1-P	Field mustard	nucleus	31.8	29.03
Bra013730.1-P	Field mustard	nucleus	32.16	28.89
Bra003068.1-P	Field mustard	nucleus	36.75	28.57
Bra022643.1-P	Field mustard	nucleus	35.34	28.41
Bra029079.1-P	Field mustard	nucleus	33.92	27.99
Bra000736.1-P	Field mustard	nucleus	25.8	26.74
Bra033923.1-P	Field mustard	nucleus	24.73	22.15
Bra004033.1-P	Field mustard	nucleus	24.38	21.77
Bra004318.1-P	Field mustard	nucleus	21.2	19.74
Bra036360.1-P	Field mustard	nucleus	19.08	19.22
Bra025170.1-P	Field mustard	nucleus	20.14	17.92
Bra024743.1-P	Field mustard	plastid	20.49	17.37

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra003462	EnsemblPlants:Bra003462.1
EnsemblPlants:Bra003462.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0042991	GO:GO:0043565	GO:GO:0048366	GO:GO:0048825	InterPro:IPR001471	InterPro:IPR036955
UniProt:M4CGX9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000254186D	SEG:seg	:	:

Description

AT2G46310 (E=1e-060) CRF5 | CRF5 (CYTOKININ RESPONSE FACTOR 5); DNA binding / transcription factor

Coordinates

chrA07:+:13316599..13317450

Molecular Weight (calculated)

31792.0 Da

IEP (calculated)

5.191

GRAVY (calculated)

-0.734

Length

283 amino acids

Sequence
(BLAST)

001: MERGSRRVKF TEHCTVKPVP AKPSNGSPRV VRISFTDPFA TDSSSDEEEN DKASPTPRVK RYVEEIRFGE TKPPRKARCK AEKKGCGGER KAKADVSANP
101: IKYRGVRQRR WGSFAAEIRD SASRTRIWLG TFATAEEAAV AYDRAAIRLK GHNALTNFLT PPSPEETTPV IDLKTVSGCY SGSQSLCSPT SVLRFNVKEE
201: TAEVKPDVAG LFPDPYSLPE FSLAGECFWD SEFPPEPLFV DEIEIRKPVP NRRDDDEPEE FSFRLNGDFD STPWDVDNFF ELD

Best Arabidopsis Sequence Match ( AT3G61630.1 )
(BLAST)

001: MERRTRRVKF TENRTVTNVA ATPSNGSPRL VRITVTDPFA TDSSSDDDDN NNVTVVPRVK RYVKEIRFCQ GESSSSTAAR KGKHKEEESV VVEDDVSTSV
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD

Arabidopsis Description

CRF6CRF6 [Source:UniProtKB/TrEMBL;Acc:A0A178VFH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.