Factsheet for Bra004548.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000736.1-P
Bra003068.1-P
Bra003462.1-P
Bra003936.1-P
Bra004548.1-P
Bra007963.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra019270.1-P
Bra022643.1-P
Bra023876.1-P
Bra025394.1-P
Bra029079.1-P
Bra036215.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46310.1	Bra012352.1-P	AT1G22985.1	21705390
AT2G46310.1	Bra016367.1-P	AT1G22985.1	21705390
AT2G46310.1	Bra003936.1-P	AT1G71130.1	21705390
AT2G46310.1	Bra007963.1-P	AT1G71130.1	21705390
AT2G46310.1	Bra004548.1-P	AT2G46310.1	21705390
AT2G46310.1	Bra023876.1-P	AT3G21510.1	21705390
AT2G46310.1	Bra025394.1-P	AT3G29350.1	21705390
AT2G46310.1	Bra036215.1-P	AT3G29350.1	21705390
AT2G46310.1	Bra003462.1-P	AT3G61630.1	21705390
AT2G46310.1	Bra000736.1-P	AT4G11140.1	21705390
AT2G46310.1	Bra013730.1-P	AT4G23750.1	21705390
AT2G46310.1	Bra019270.1-P	AT4G23750.1	21705390
AT2G46310.1	Bra003068.1-P	AT5G53290.1	21705390
AT2G46310.1	Bra022643.1-P	AT5G53290.1	21705390
AT2G46310.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80006	Canola	nucleus	100.0	100.0
AT2G46310.1	Thale cress	nucleus	65.06	59.52
Bra003462.1-P	Field mustard	nucleus	50.19	47.7
Bra012352.1-P	Field mustard	nucleus	22.3	40.82
Bra007963.1-P	Field mustard	nucleus	24.54	39.52
Bra003936.1-P	Field mustard	nucleus	23.42	38.18
Bra016367.1-P	Field mustard	nucleus	21.93	37.34
VIT_15s0046g01390.t01	Wine grape	nucleus	37.17	31.85
Bra019270.1-P	Field mustard	nucleus	33.46	29.03
Bra010389.1-P	Field mustard	nucleus	32.71	26.83
Bra040839.1-P	Field mustard	nucleus	32.34	26.77
Bra026295.1-P	Field mustard	nucleus	33.46	26.71
Bra013730.1-P	Field mustard	nucleus	31.23	26.67
Bra022643.1-P	Field mustard	nucleus	33.83	25.85
Bra003068.1-P	Field mustard	nucleus	34.94	25.82
Bra029079.1-P	Field mustard	nucleus	31.6	24.78
Bra000736.1-P	Field mustard	nucleus	24.91	24.54
Bra033923.1-P	Field mustard	nucleus	23.42	19.94
Bra004318.1-P	Field mustard	nucleus	22.3	19.74
Bra004033.1-P	Field mustard	nucleus	22.68	19.24
Bra036360.1-P	Field mustard	nucleus	19.33	18.51
Bra024743.1-P	Field mustard	plastid	21.93	17.66
Bra025170.1-P	Field mustard	nucleus	18.59	15.72

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra004548	EnsemblPlants:Bra004548.1
EnsemblPlants:Bra004548.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0042991
GO:GO:0048366	GO:GO:0048825	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CK14	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00025474B2	SEG:seg	:	:	:	:

Description

AT2G46310 (E=5e-073) CRF5 | CRF5 (CYTOKININ RESPONSE FACTOR 5); DNA binding / transcription factor

Coordinates

chrA05:-:758917..759726

Molecular Weight (calculated)

29994.4 Da

IEP (calculated)

7.874

GRAVY (calculated)

-0.468

Length

269 amino acids

Sequence
(BLAST)

001: MKSRERNVKY TVHRKLTSLS PKVVKITVTD PCATDSSSDE ENDDRFVSPA KRVKRYVEVI RFCDAAKRKK PTNKAAEPVK YRGVRRRPWG KYAAEIRDPS
101: KRARVWLGTF DTAEEAAIGY DKAAIRIKGR HALTNILTPP SSPPAIDLET VSRCDDSAVE ESQSSSIMRS PTSVLRFSAG PINLSSAHQE APAGLASPDP
201: FFLPPELFPA RDCFWDSEIA PDPLFLDEFQ LLPNSSTVSK LSESFPLGVI GDLSSCSWDV DEFFKDHLF

Best Arabidopsis Sequence Match ( AT2G46310.1 )
(BLAST)

001: MKSRVRKSKY TVHRKITSTP FDGFPKIVKI IVTDPCATDS SSDEENDNKS VAPRVKRYVD EIRFCDEDDE PKPARKAKKK SPAAAAENGG DLVKSVVKYR
101: GVRQRPWGKF AAEIRDPSSR TRLWLGTFAT AEEAAIGYDR AAIRIKGHNA QTNFLTPPPS PTTEVLPETP VIDLETVSGC DSARESQISL CSPTSVLRFS
201: HNDETEYRTE PTEEQNPFFL PDLFRSGDYF WDSEITPDPL FLDEFHQSLL PNINNNNTVC DKDTNLSDSF PLGVIGDFSS WDVDEFFQDH LLDK

Arabidopsis Description

CRF5Ethylene-responsive transcription factor CRF5 [Source:UniProtKB/Swiss-Prot;Acc:O82339]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.