Factsheet for Bra013730.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000736.1-P
Bra003068.1-P
Bra003462.1-P
Bra004548.1-P
Bra010389.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra016526.1-P
Bra019270.1-P
Bra022643.1-P
Bra023876.1-P
Bra025708.1-P
Bra026295.1-P
Bra029079.1-P
Bra040839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23750.1	Bra016526.1-P	AT1G19050.1	21705390
AT4G23750.1	Bra025708.1-P	AT1G19050.1	21705390
AT4G23750.1	Bra012352.1-P	AT1G22985.1	21705390
AT4G23750.1	Bra016367.1-P	AT1G22985.1	21705390
AT4G23750.1	Bra004548.1-P	AT2G46310.1	21705390
AT4G23750.1	Bra023876.1-P	AT3G21510.1	21705390
AT4G23750.1	Bra003462.1-P	AT3G61630.1	21705390
AT4G23750.1	Bra000736.1-P	AT4G11140.1	21705390
AT4G23750.1	Bra013730.1-P	AT4G23750.1	21705390
AT4G23750.1	Bra019270.1-P	AT4G23750.1	21705390
AT4G23750.1	Bra010389.1-P	AT4G27950.1	21705390
AT4G23750.1	Bra026295.1-P	AT4G27950.1	21705390
AT4G23750.1	Bra040839.1-P	AT4G27950.1	21705390
AT4G23750.1	Bra003068.1-P	AT5G53290.1	21705390
AT4G23750.1	Bra022643.1-P	AT5G53290.1	21705390
AT4G23750.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47623	Canola	nucleus	100.0	100.0
CDY03521	Canola	nucleus	94.92	92.86
Bra019270.1-P	Field mustard	nucleus	78.41	79.68
AT4G23750.1	Thale cress	nucleus	77.78	71.43
Bra000736.1-P	Field mustard	nucleus	44.76	51.65
Bra016367.1-P	Field mustard	nucleus	24.44	48.73
Bra012352.1-P	Field mustard	nucleus	21.59	46.26
Bra007963.1-P	Field mustard	nucleus	24.13	45.51
KRG92510	Soybean	nucleus	27.62	45.08
Bra003936.1-P	Field mustard	nucleus	23.49	44.85
KRH27859	Soybean	nucleus	37.46	40.83
KRH77624	Soybean	nucleus	37.46	39.6
KRH41287	Soybean	nucleus	36.51	39.25
PGSC0003DMT400032058	Potato	nucleus	39.05	36.39
Solyc08g081960.1.1	Tomato	nucleus	38.73	35.99
KRH60010	Soybean	nucleus	37.14	35.03
Bra003462.1-P	Field mustard	nucleus	28.89	32.16
Bra003068.1-P	Field mustard	nucleus	36.19	31.32
Bra004548.1-P	Field mustard	nucleus	26.67	31.23
Bra029079.1-P	Field mustard	nucleus	33.65	30.9
Bra040839.1-P	Field mustard	nucleus	31.75	30.77
Bra026295.1-P	Field mustard	nucleus	32.7	30.56
Bra022643.1-P	Field mustard	nucleus	33.65	30.11
Bra010389.1-P	Field mustard	nucleus	30.16	28.96
Bra036360.1-P	Field mustard	nucleus	21.27	23.84
Bra004033.1-P	Field mustard	nucleus	22.22	22.08
Bra025170.1-P	Field mustard	nucleus	21.9	21.7
Bra033923.1-P	Field mustard	nucleus	21.59	21.52
Bra004318.1-P	Field mustard	nucleus	20.63	21.38
Bra024743.1-P	Field mustard	plastid	20.32	19.16

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra013730
EnsemblPlants:Bra013730.1	EnsemblPlants:Bra013730.1-P	ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DB70	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002545ED1	SEG:seg	:	:	:

Description

AT4G11140 (E=5e-067) CRF1 | CRF1 (CYTOKININ RESPONSE FACTOR 1); DNA binding / transcription factor

Coordinates

chrA01:+:7472052..7472999

Molecular Weight (calculated)

34897.7 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.538

Length

315 amino acids

Sequence
(BLAST)

001: METEKQLVLP KIKFAEHKTN TVPELTNNHQ PRILRISVAD PDATDSSSDE EEQRLTSKRR RIKKFVNEVV LDTGASGCSS QIESKKRRKR AVVVKSETPS
101: PPEVSKTTEK KYRGVRQRPW GKWAAEIRDP LRRVRLWLGT FNTAEEAALV YDSAAIQLRG PDALTNFPTT EIKSSSPPPS PVKRKRKIKD DVASSSTCSD
201: GLCSPVSVLR SPFAVDSSTP TAAVIVKEEP STTTASETFS DFSAPLFTDE DLFDFRSSVV PDYLGGDLFG EDLFADTCTD MNFGFDFGSG LSDWHVDDHF
301: QDIGDLFGSD PLLTV

Best Arabidopsis Sequence Match ( AT4G23750.1 )
(BLAST)

001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV

Arabidopsis Description

CRF2Ethylene-responsive transcription factor CRF2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.