CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71724
CDX80006
CDX83788
CDX90774
CDX91694
CDX92852
CDX94215
CDX95687
CDX96208
CDX96681
CDX97406
CDY03521
CDY05133
CDY10965
CDY11369
CDY12500
CDY14263
CDY19286
CDY26701
CDY29870
CDY37282
CDY41014
CDY41468
CDY42030
CDY47066
CDY47623
CDY49175
CDY52005
CDY53906
CDY54340
CDY61587
CDY70837
CDY71170
CDY71485

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23750.1	CDX83788	AT1G19050.1	21705390
AT4G23750.1	CDX96681	AT1G19050.1	21705390
AT4G23750.1	CDY26701	AT1G19050.1	21705390
AT4G23750.1	CDY41014	AT1G19050.1	21705390
AT4G23750.1	CDX91694	AT1G22985.1	21705390
AT4G23750.1	CDY12500	AT1G22985.1	21705390
AT4G23750.1	CDY41468	AT1G22985.1	21705390
AT4G23750.1	CDY70837	AT1G22985.1	21705390
AT4G23750.1	CDX80006	AT2G46310.1	21705390
AT4G23750.1	CDX95687	AT2G46310.1	21705390
AT4G23750.1	CDY42030	AT2G46310.1	21705390
AT4G23750.1	CDY19286	AT3G21510.1	21705390
AT4G23750.1	CDY37282	AT3G21510.1	21705390
AT4G23750.1	CDX71724	AT3G61630.1	21705390
AT4G23750.1	CDY11369	AT3G61630.1	21705390
AT4G23750.1	CDY52005	AT3G61630.1	21705390
AT4G23750.1	CDY53906	AT3G61630.1	21705390
AT4G23750.1	CDX90774	AT4G11140.1	21705390
AT4G23750.1	CDY05133	AT4G11140.1	21705390
AT4G23750.1	CDX94215	AT4G23750.1	21705390
AT4G23750.1	CDY03521	AT4G23750.1	21705390
AT4G23750.1	CDY10965	AT4G23750.1	21705390
AT4G23750.1	CDY47623	AT4G23750.1	21705390
AT4G23750.1	CDX92852	AT4G27950.1	21705390
AT4G23750.1	CDX97406	AT4G27950.1	21705390
AT4G23750.1	CDY14263	AT4G27950.1	21705390
AT4G23750.1	CDY29870	AT4G27950.1	21705390
AT4G23750.1	CDY71170	AT4G27950.1	21705390
AT4G23750.1	CDY71485	AT4G27950.1	21705390
AT4G23750.1	CDX96208	AT5G53290.1	21705390
AT4G23750.1	CDY47066	AT5G53290.1	21705390
AT4G23750.1	CDY49175	AT5G53290.1	21705390
AT4G23750.1	CDY54340	AT5G53290.1	21705390
AT4G23750.1	CDY61587	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013730.1-P	Field mustard	nucleus	100.0	100.0
CDY03521	Canola	nucleus	94.92	92.86
CDY10965	Canola	nucleus	75.87	80.74
CDX94215	Canola	nucleus	79.37	79.62
AT4G23750.1	Thale cress	nucleus	77.78	71.43
CDY05133	Canola	nucleus	46.67	53.07
CDX90774	Canola	nucleus	45.4	51.62
CDY41468	Canola	nucleus	24.76	49.37
CDY12500	Canola	nucleus	23.81	48.39
CDY70837	Canola	nucleus	22.22	47.62
CDX91694	Canola	nucleus	24.13	47.2
CDY09516	Canola	nucleus	24.44	46.95
CDY66105	Canola	nucleus	24.13	45.51
KRG92510	Soybean	nucleus	27.62	45.08
CDY49223	Canola	nucleus	23.49	44.85
CDX68325	Canola	nucleus	23.17	44.24
KRH27859	Soybean	nucleus	37.46	40.83
KRH77624	Soybean	nucleus	37.46	39.6
KRH41287	Soybean	nucleus	36.51	39.25
PGSC0003DMT400032058	Potato	nucleus	39.05	36.39
Solyc08g081960.1.1	Tomato	nucleus	38.73	35.99
KRH60010	Soybean	nucleus	37.14	35.03
CDX71724	Canola	nucleus	29.84	32.64
CDY11369	Canola	nucleus	28.89	32.16
CDY52005	Canola	nucleus	28.89	31.71
CDY53906	Canola	nucleus	28.57	31.69
CDY61587	Canola	nucleus	36.19	31.49
CDY47066	Canola	nucleus	33.97	31.29
CDX80006	Canola	nucleus	26.67	31.23
CDX92852	Canola	nucleus	31.75	30.86
CDY29870	Canola	nucleus	31.75	30.77
CDY42030	Canola	nucleus	26.67	30.77
CDX95687	Canola	nucleus	24.76	30.71
CDX96208	Canola	nucleus	33.97	30.66
CDY71170	Canola	nucleus	32.7	30.56
CDY54340	Canola	nucleus	32.7	30.56
CDY49175	Canola	nucleus	33.97	30.48
CDY71485	Canola	nucleus	32.38	30.27
CDX97406	Canola	nucleus	30.48	29.27
CDY14263	Canola	nucleus	30.16	28.96
CDX84990	Canola	nucleus	20.63	26.21
CDY42104	Canola	nucleus	14.6	25.7
CDY04234	Canola	nucleus	22.54	22.4
CDY40978	Canola	nucleus	17.78	22.13
CDY65135	Canola	nucleus	21.9	22.04
CDY07380	Canola	nucleus	21.9	21.9
CDY13596	Canola	nucleus	21.9	21.77
CDX83568	Canola	nucleus	21.59	21.73
CDY38591	Canola	nucleus	20.63	21.59
CDY44887	Canola	nucleus	21.59	21.52
CDX96010	Canola	nucleus	20.63	21.38
CDX99741	Canola	nucleus	20.0	20.0

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	GO:A0A078IEQ2	UniProt:A0A078IEQ2	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY47623	ProteinID:CDY47623	ProteinID:CDY47623.1	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00087837001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194
PANTHER:PTHR31194:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002545ED1	SEG:seg	:

Description

BnaA01g13420DBnaA01g13420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEQ2]

Coordinates

chrLK032726:-:87031..87978

Molecular Weight (calculated)

34897.7 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.538

Length

315 amino acids

Sequence
(BLAST)

001: METEKQLVLP KIKFAEHKTN TVPELTNNHQ PRILRISVAD PDATDSSSDE EEQRLTSKRR RIKKFVNEVV LDTGASGCSS QIESKKRRKR AVVVKSETPS
101: PPEVSKTTEK KYRGVRQRPW GKWAAEIRDP LRRVRLWLGT FNTAEEAALV YDSAAIQLRG PDALTNFPTT EIKSSSPPPS PVKRKRKIKD DVASSSTCSD
201: GLCSPVSVLR SPFAVDSSTP TAAVIVKEEP STTTASETFS DFSAPLFTDE DLFDFRSSVV PDYLGGDLFG EDLFADTCTD MNFGFDFGSG LSDWHVDDHF
301: QDIGDLFGSD PLLTV

Best Arabidopsis Sequence Match ( AT4G23750.1 )
(BLAST)

001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV

Arabidopsis Description

CRF2Ethylene-responsive transcription factor CRF2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.