Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G46310.1 | Thale cress | nucleus | 66.54 | 57.48 |
| CDX80006 | Canola | nucleus | 57.48 | 54.28 |
| CDY42030 | Canola | nucleus | 55.51 | 51.65 |
| CDY11369 | Canola | nucleus | 48.82 | 43.82 |
| CDX71724 | Canola | nucleus | 49.21 | 43.4 |
| CDY52005 | Canola | nucleus | 47.24 | 41.81 |
| CDY53906 | Canola | nucleus | 46.06 | 41.2 |
| CDY70837 | Canola | nucleus | 19.29 | 33.33 |
| CDY41468 | Canola | nucleus | 20.47 | 32.91 |
| CDY66105 | Canola | nucleus | 21.26 | 32.34 |
| CDY09516 | Canola | nucleus | 20.87 | 32.32 |
| CDX68325 | Canola | nucleus | 20.87 | 32.12 |
| CDY49223 | Canola | nucleus | 20.87 | 32.12 |
| CDX91694 | Canola | nucleus | 19.68 | 31.06 |
| CDY12500 | Canola | nucleus | 18.9 | 30.97 |
| VIT_15s0046g01390.t01 | Wine grape | nucleus | 35.43 | 28.66 |
| CDY10965 | Canola | nucleus | 29.92 | 25.68 |
| CDX92852 | Canola | nucleus | 32.68 | 25.62 |
| CDY03521 | Canola | nucleus | 32.28 | 25.47 |
| CDY29870 | Canola | nucleus | 31.89 | 24.92 |
| CDY47623 | Canola | nucleus | 30.71 | 24.76 |
| CDY14263 | Canola | nucleus | 31.89 | 24.7 |
| CDX94215 | Canola | nucleus | 30.32 | 24.52 |
| CDX97406 | Canola | nucleus | 31.5 | 24.39 |
| CDX96208 | Canola | nucleus | 33.46 | 24.36 |
| CDY49175 | Canola | nucleus | 33.46 | 24.22 |
| CDY71170 | Canola | nucleus | 31.5 | 23.74 |
| CDY71485 | Canola | nucleus | 31.5 | 23.74 |
| CDY42104 | Canola | nucleus | 16.54 | 23.46 |
| CDY61587 | Canola | nucleus | 32.68 | 22.93 |
| CDY47066 | Canola | nucleus | 30.71 | 22.81 |
| CDY54340 | Canola | nucleus | 29.92 | 22.55 |
| CDX90774 | Canola | nucleus | 22.83 | 20.94 |
| CDY05133 | Canola | nucleus | 22.83 | 20.94 |
| CDY40978 | Canola | nucleus | 18.5 | 18.58 |
| CDX84990 | Canola | nucleus | 18.11 | 18.55 |
| CDY65135 | Canola | nucleus | 22.05 | 17.89 |
| CDY44887 | Canola | nucleus | 22.05 | 17.72 |
| CDY38591 | Canola | nucleus | 20.47 | 17.28 |
| CDY07380 | Canola | nucleus | 20.87 | 16.83 |
| CDY04234 | Canola | nucleus | 20.87 | 16.72 |
| CDX96010 | Canola | nucleus | 19.68 | 16.45 |
| CDY13596 | Canola | nucleus | 20.08 | 16.09 |
| CDX83568 | Canola | nucleus | 19.68 | 15.97 |
| CDX99741 | Canola | nucleus | 18.11 | 14.6 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | GO:A0A078E3I0 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX95687 |
| ProteinID:CDX95687 | ProteinID:CDX95687.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00101575001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF43 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EDEABD | SEG:seg | : | : | : | : |
Description
BnaC03g25680D
Coordinates
chrLK031890:+:654333..655186
Molecular Weight (calculated)
28532.1 Da
IEP (calculated)
4.815
GRAVY (calculated)
-0.671
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSRERKVKY TVHRKTTEAP ATRVKRYVEE IRFEGAVKRE KTETEKAAAE KNGDDGTVKP VKYRGVRQRP WGKYAAEIRD PSTRTRLWLG TFATAEEAAI
101: GYDRAAIRFK GPKALTNFMT PPTSPPVIDI EAVSGCNSAK ESQSSICSHT SVLRFDPNEE TECRTEEPAF NEETPASSSL SDPFFLSDLF GGGDCLWDSE
201: ITTDHLFLDE IHPNTNTISS EYPNLSESFP ISMIGDLSSC SWDVDEFFQD HLLD
101: GYDRAAIRFK GPKALTNFMT PPTSPPVIDI EAVSGCNSAK ESQSSICSHT SVLRFDPNEE TECRTEEPAF NEETPASSSL SDPFFLSDLF GGGDCLWDSE
201: ITTDHLFLDE IHPNTNTISS EYPNLSESFP ISMIGDLSSC SWDVDEFFQD HLLD
001: MKSRVRKSKY TVHRKITSTP FDGFPKIVKI IVTDPCATDS SSDEENDNKS VAPRVKRYVD EIRFCDEDDE PKPARKAKKK SPAAAAENGG DLVKSVVKYR
101: GVRQRPWGKF AAEIRDPSSR TRLWLGTFAT AEEAAIGYDR AAIRIKGHNA QTNFLTPPPS PTTEVLPETP VIDLETVSGC DSARESQISL CSPTSVLRFS
201: HNDETEYRTE PTEEQNPFFL PDLFRSGDYF WDSEITPDPL FLDEFHQSLL PNINNNNTVC DKDTNLSDSF PLGVIGDFSS WDVDEFFQDH LLDK
101: GVRQRPWGKF AAEIRDPSSR TRLWLGTFAT AEEAAIGYDR AAIRIKGHNA QTNFLTPPPS PTTEVLPETP VIDLETVSGC DSARESQISL CSPTSVLRFS
201: HNDETEYRTE PTEEQNPFFL PDLFRSGDYF WDSEITPDPL FLDEFHQSLL PNINNNNTVC DKDTNLSDSF PLGVIGDFSS WDVDEFFQDH LLDK
Arabidopsis Description
CRF5Ethylene-responsive transcription factor CRF5 [Source:UniProtKB/Swiss-Prot;Acc:O82339]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.