Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14263 | Canola | nucleus | 96.34 | 96.34 |
| CDX92852 | Canola | nucleus | 74.39 | 75.31 |
| CDY29870 | Canola | nucleus | 73.78 | 74.46 |
| CDY71485 | Canola | nucleus | 75.91 | 73.89 |
| CDY71170 | Canola | nucleus | 74.39 | 72.4 |
| AT4G27950.1 | Thale cress | nucleus | 71.34 | 69.85 |
| CDY47066 | Canola | nucleus | 48.48 | 46.49 |
| CDY54340 | Canola | nucleus | 47.56 | 46.29 |
| CDY49175 | Canola | nucleus | 48.48 | 45.3 |
| CDX96208 | Canola | nucleus | 48.17 | 45.27 |
| CDY61587 | Canola | nucleus | 49.39 | 44.75 |
| CDY70837 | Canola | nucleus | 19.51 | 43.54 |
| CDY09516 | Canola | nucleus | 21.04 | 42.07 |
| CDX68325 | Canola | nucleus | 21.04 | 41.82 |
| CDY49223 | Canola | nucleus | 21.04 | 41.82 |
| CDY66105 | Canola | nucleus | 21.04 | 41.32 |
| CDY12500 | Canola | nucleus | 19.51 | 41.29 |
| CDY41468 | Canola | nucleus | 19.51 | 40.51 |
| CDX91694 | Canola | nucleus | 19.51 | 39.75 |
| CDY11369 | Canola | nucleus | 32.93 | 38.16 |
| CDX71724 | Canola | nucleus | 32.01 | 36.46 |
| CDY53906 | Canola | nucleus | 29.57 | 34.15 |
| CDY52005 | Canola | nucleus | 29.88 | 34.15 |
| CDY10965 | Canola | nucleus | 29.27 | 32.43 |
| CDX80006 | Canola | nucleus | 26.52 | 32.34 |
| CDX95687 | Canola | nucleus | 24.39 | 31.5 |
| CDX94215 | Canola | nucleus | 29.88 | 31.21 |
| CDY42030 | Canola | nucleus | 25.91 | 31.14 |
| CDY47623 | Canola | nucleus | 29.27 | 30.48 |
| CDY03521 | Canola | nucleus | 29.57 | 30.12 |
| CDX90774 | Canola | nucleus | 23.48 | 27.8 |
| CDY05133 | Canola | nucleus | 22.87 | 27.08 |
| CDX84990 | Canola | nucleus | 17.38 | 22.98 |
| CDY44887 | Canola | nucleus | 20.73 | 21.52 |
| CDY65135 | Canola | nucleus | 20.43 | 21.41 |
| CDY42104 | Canola | nucleus | 11.59 | 21.23 |
| CDY07380 | Canola | nucleus | 19.51 | 20.32 |
| CDY38591 | Canola | nucleus | 18.6 | 20.27 |
| CDY04234 | Canola | nucleus | 19.51 | 20.19 |
| CDX96010 | Canola | nucleus | 18.6 | 20.07 |
| CDY40978 | Canola | nucleus | 14.63 | 18.97 |
| CDY13596 | Canola | nucleus | 18.29 | 18.93 |
| CDX83568 | Canola | nucleus | 17.68 | 18.53 |
| CDX99741 | Canola | nucleus | 16.46 | 17.14 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078E863 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX97406 |
| ProteinID:CDX97406 | ProteinID:CDX97406.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00104541001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF40 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EF2EF9 | SEG:seg | : | : | : | : |
Description
BnaC08g12710D
Coordinates
chrLK031899:-:421434..422420
Molecular Weight (calculated)
37248.7 Da
IEP (calculated)
4.518
GRAVY (calculated)
-0.603
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMDEYMELR SVKYTEHKTV IKKYTKKLPV ENKKKISTGR DSARLVRLCV MDRDATDSSS DDEEFLFPRR RVKRLINEIR VEPSSSSGEV SAGKTLTAVD
101: PPLQKVSVSG VEQSPRKFRG VRRRPWGKYA AEIRDPEQRR RIWLGTFSTA EEAAMVYDNA AIRLRGPDAL TNFTVPTEPE PEPEPVRNIS VSLTSESMDD
201: SHHLLSPTSV LNYQISELTD EPIKPVKQEF PEREPISWSV GEDISSNTDD SFPLDIPFLD KYFNESLPDI SIFDQSMSTI ESSDKDFFNG LMFFDDNIGG
301: ENYYPDIKEI GSVLNDLDES LISDLLAV
101: PPLQKVSVSG VEQSPRKFRG VRRRPWGKYA AEIRDPEQRR RIWLGTFSTA EEAAMVYDNA AIRLRGPDAL TNFTVPTEPE PEPEPVRNIS VSLTSESMDD
201: SHHLLSPTSV LNYQISELTD EPIKPVKQEF PEREPISWSV GEDISSNTDD SFPLDIPFLD KYFNESLPDI SIFDQSMSTI ESSDKDFFNG LMFFDDNIGG
301: ENYYPDIKEI GSVLNDLDES LISDLLAV
001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
Arabidopsis Description
CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.