Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11369 | Canola | nucleus | 92.01 | 93.64 |
| CDY52005 | Canola | nucleus | 67.36 | 67.6 |
| CDY53906 | Canola | nucleus | 66.32 | 67.25 |
| AT3G61630.1 | Thale cress | nucleus | 68.75 | 62.86 |
| CDX80006 | Canola | nucleus | 48.61 | 52.04 |
| CDY42030 | Canola | nucleus | 46.88 | 49.45 |
| CDX95687 | Canola | nucleus | 43.4 | 49.21 |
| CDY70837 | Canola | nucleus | 20.49 | 40.14 |
| CDY41468 | Canola | nucleus | 21.18 | 38.61 |
| CDY12500 | Canola | nucleus | 20.49 | 38.06 |
| CDX91694 | Canola | nucleus | 21.18 | 37.89 |
| CDY66105 | Canola | nucleus | 21.88 | 37.72 |
| CDY09516 | Canola | nucleus | 21.18 | 37.2 |
| CDX68325 | Canola | nucleus | 21.18 | 36.97 |
| CDY49223 | Canola | nucleus | 21.18 | 36.97 |
| VIT_15s0046g01390.t01 | Wine grape | nucleus | 36.11 | 33.12 |
| CDX97406 | Canola | nucleus | 36.46 | 32.01 |
| CDY10965 | Canola | nucleus | 32.64 | 31.76 |
| CDY14263 | Canola | nucleus | 36.11 | 31.71 |
| CDX92852 | Canola | nucleus | 35.42 | 31.48 |
| CDY29870 | Canola | nucleus | 35.07 | 31.08 |
| CDX94215 | Canola | nucleus | 33.33 | 30.57 |
| CDY71485 | Canola | nucleus | 35.07 | 29.97 |
| CDY71170 | Canola | nucleus | 35.07 | 29.97 |
| CDY47623 | Canola | nucleus | 32.64 | 29.84 |
| CDY03521 | Canola | nucleus | 32.29 | 28.88 |
| CDY61587 | Canola | nucleus | 34.72 | 27.62 |
| CDX90774 | Canola | nucleus | 26.39 | 27.44 |
| CDY47066 | Canola | nucleus | 32.29 | 27.19 |
| CDY05133 | Canola | nucleus | 26.04 | 27.08 |
| CDY49175 | Canola | nucleus | 32.99 | 27.07 |
| CDX96208 | Canola | nucleus | 32.64 | 26.93 |
| CDY54340 | Canola | nucleus | 31.25 | 26.71 |
| CDX84990 | Canola | nucleus | 20.83 | 24.19 |
| CDY42104 | Canola | nucleus | 13.54 | 21.79 |
| CDY65135 | Canola | nucleus | 22.92 | 21.09 |
| CDY44887 | Canola | nucleus | 22.92 | 20.89 |
| CDY38591 | Canola | nucleus | 21.18 | 20.27 |
| CDY04234 | Canola | nucleus | 22.22 | 20.19 |
| CDX96010 | Canola | nucleus | 21.18 | 20.07 |
| CDY07380 | Canola | nucleus | 21.88 | 20.0 |
| CDY40978 | Canola | nucleus | 16.32 | 18.58 |
| CDY13596 | Canola | nucleus | 20.14 | 18.3 |
| CDX83568 | Canola | nucleus | 19.44 | 17.89 |
| CDX99741 | Canola | nucleus | 17.71 | 16.19 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078C6E0 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX71724 |
| ProteinID:CDX71724 | ProteinID:CDX71724.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00155415001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF43 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EC97BB | SEG:seg | : | : | : | : |
Description
BnaC08g31500D
Coordinates
chrLK031795:-:146668..147700
Molecular Weight (calculated)
32520.3 Da
IEP (calculated)
4.389
GRAVY (calculated)
-0.767
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MERRTRRVKF TEHHKVTPVP AKPSNDSPRV VRIAYTDPFA TDSSSDDDDD NNSNVTVAPR VKRYVEEIRF GETKSSSSRK ARKGGNDDVS ANPVKYRGVR
101: RRPWGKFAAE IRDPSSRSRV WLGTFVTAEE AAMVYDRAAI KFRGHNAQTN FLTPPPPPSP SPVIDLETVS GCDSGSQSLR SPTSVLRFNF NEKTEVEIEP
201: IELSSEVEPA SLFPDPYSLP DLCLAGEYFW DSETPPEPLF LDDEIEIEKP LLNPVIPKEE NEPEDFSFDL SEDFDASPWD VDNFFEND
101: RRPWGKFAAE IRDPSSRSRV WLGTFVTAEE AAMVYDRAAI KFRGHNAQTN FLTPPPPPSP SPVIDLETVS GCDSGSQSLR SPTSVLRFNF NEKTEVEIEP
201: IELSSEVEPA SLFPDPYSLP DLCLAGEYFW DSETPPEPLF LDDEIEIEKP LLNPVIPKEE NEPEDFSFDL SEDFDASPWD VDNFFEND
001: MERRTRRVKF TENRTVTNVA ATPSNGSPRL VRITVTDPFA TDSSSDDDDN NNVTVVPRVK RYVKEIRFCQ GESSSSTAAR KGKHKEEESV VVEDDVSTSV
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD
Arabidopsis Description
CRF6CRF6 [Source:UniProtKB/TrEMBL;Acc:A0A178VFH2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.