Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29870 | Canola | nucleus | 95.06 | 94.77 |
| CDX97406 | Canola | nucleus | 75.31 | 74.39 |
| CDY14263 | Canola | nucleus | 74.38 | 73.48 |
| CDY71485 | Canola | nucleus | 75.62 | 72.7 |
| CDY71170 | Canola | nucleus | 75.62 | 72.7 |
| AT4G27950.1 | Thale cress | nucleus | 71.91 | 69.55 |
| CDY47066 | Canola | nucleus | 47.84 | 45.32 |
| CDY49175 | Canola | nucleus | 49.07 | 45.3 |
| CDX96208 | Canola | nucleus | 48.46 | 44.99 |
| CDY54340 | Canola | nucleus | 46.6 | 44.81 |
| CDY61587 | Canola | nucleus | 48.77 | 43.65 |
| CDY70837 | Canola | nucleus | 19.75 | 43.54 |
| CDY12500 | Canola | nucleus | 20.06 | 41.94 |
| CDX68325 | Canola | nucleus | 21.3 | 41.82 |
| CDY49223 | Canola | nucleus | 21.3 | 41.82 |
| CDY41468 | Canola | nucleus | 20.37 | 41.77 |
| CDY09516 | Canola | nucleus | 20.99 | 41.46 |
| CDX91694 | Canola | nucleus | 20.37 | 40.99 |
| CDY66105 | Canola | nucleus | 20.99 | 40.72 |
| CDY11369 | Canola | nucleus | 32.72 | 37.46 |
| CDX71724 | Canola | nucleus | 31.48 | 35.42 |
| CDY10965 | Canola | nucleus | 30.86 | 33.78 |
| CDY53906 | Canola | nucleus | 29.32 | 33.45 |
| CDY52005 | Canola | nucleus | 29.63 | 33.45 |
| CDX80006 | Canola | nucleus | 27.47 | 33.09 |
| CDX95687 | Canola | nucleus | 25.62 | 32.68 |
| CDY42030 | Canola | nucleus | 27.47 | 32.6 |
| CDX94215 | Canola | nucleus | 31.48 | 32.48 |
| CDY47623 | Canola | nucleus | 30.86 | 31.75 |
| CDY03521 | Canola | nucleus | 31.48 | 31.68 |
| CDX90774 | Canola | nucleus | 24.69 | 28.88 |
| CDY05133 | Canola | nucleus | 24.07 | 28.16 |
| CDX84990 | Canola | nucleus | 17.59 | 22.98 |
| CDY65135 | Canola | nucleus | 20.99 | 21.73 |
| CDY44887 | Canola | nucleus | 20.99 | 21.52 |
| CDY42104 | Canola | nucleus | 11.73 | 21.23 |
| CDY07380 | Canola | nucleus | 20.06 | 20.63 |
| CDY38591 | Canola | nucleus | 19.14 | 20.6 |
| CDY04234 | Canola | nucleus | 20.06 | 20.5 |
| CDX96010 | Canola | nucleus | 18.83 | 20.07 |
| CDY40978 | Canola | nucleus | 15.12 | 19.37 |
| CDY13596 | Canola | nucleus | 18.83 | 19.24 |
| CDX83568 | Canola | nucleus | 18.21 | 18.85 |
| CDX99741 | Canola | nucleus | 17.59 | 18.1 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078DVD7 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX92852 |
| ProteinID:CDX92852 | ProteinID:CDX92852.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00154688001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF43 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EEECB0 | SEG:seg | : | : | : | : |
Description
BnaC07g41100D
Coordinates
chrLK031873:-:1127762..1128736
Molecular Weight (calculated)
37002.2 Da
IEP (calculated)
4.484
GRAVY (calculated)
-0.627
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMDEYMDFR PVKYTEHKKV IKKYTKKLPV EENKRKNSTT GRDSARLVRL CVMDGDATDS SSDDEEEFMF PRRRVKRLIN EIRVEPSSSS DEVSALAVDS
101: PPQMVSVSGA DQNQKKFRGV RRRPWGKYAA EIRDPVQRRR IWLGTFSTAE EAAIVYDNAA IRLRGPDALT NFTVPPEPEP EPDRESNVSV YSTLESVEDS
201: HHHLSSPTSV LNYRISEPVD EPVKPVKQEF IEPEPISWHL EEVNCSFPLD IPFPDNYFTE TLEDISIFDQ SMSPIQSSES NFFDDLMVFD NSNIGGESYS
301: SKIKEIGSIF NDLDDSLISE LLVV
101: PPQMVSVSGA DQNQKKFRGV RRRPWGKYAA EIRDPVQRRR IWLGTFSTAE EAAIVYDNAA IRLRGPDALT NFTVPPEPEP EPDRESNVSV YSTLESVEDS
201: HHHLSSPTSV LNYRISEPVD EPVKPVKQEF IEPEPISWHL EEVNCSFPLD IPFPDNYFTE TLEDISIFDQ SMSPIQSSES NFFDDLMVFD NSNIGGESYS
301: SKIKEIGSIF NDLDDSLISE LLVV
001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
Arabidopsis Description
CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.