Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80006 | Canola | nucleus | 89.74 | 91.08 |
| AT2G46310.1 | Thale cress | nucleus | 61.9 | 57.48 |
| CDX95687 | Canola | nucleus | 51.65 | 55.51 |
| CDY11369 | Canola | nucleus | 49.08 | 47.35 |
| CDX71724 | Canola | nucleus | 49.45 | 46.88 |
| CDY53906 | Canola | nucleus | 47.25 | 45.42 |
| CDY52005 | Canola | nucleus | 47.62 | 45.3 |
| CDY09516 | Canola | nucleus | 24.18 | 40.24 |
| CDY70837 | Canola | nucleus | 21.61 | 40.14 |
| CDY66105 | Canola | nucleus | 24.54 | 40.12 |
| CDX68325 | Canola | nucleus | 23.08 | 38.18 |
| CDY49223 | Canola | nucleus | 23.08 | 38.18 |
| CDY12500 | Canola | nucleus | 21.61 | 38.06 |
| CDY41468 | Canola | nucleus | 21.61 | 37.34 |
| CDX91694 | Canola | nucleus | 21.61 | 36.65 |
| VIT_15s0046g01390.t01 | Wine grape | nucleus | 37.0 | 32.17 |
| CDY10965 | Canola | nucleus | 32.97 | 30.41 |
| CDX94215 | Canola | nucleus | 32.6 | 28.34 |
| CDX92852 | Canola | nucleus | 32.6 | 27.47 |
| CDY03521 | Canola | nucleus | 32.23 | 27.33 |
| CDY29870 | Canola | nucleus | 31.87 | 26.77 |
| CDY71170 | Canola | nucleus | 32.97 | 26.71 |
| CDY47623 | Canola | nucleus | 30.77 | 26.67 |
| CDY71485 | Canola | nucleus | 32.6 | 26.41 |
| CDY14263 | Canola | nucleus | 31.5 | 26.22 |
| CDX97406 | Canola | nucleus | 31.14 | 25.91 |
| CDY49175 | Canola | nucleus | 32.6 | 25.36 |
| CDX96208 | Canola | nucleus | 32.23 | 25.21 |
| CDY61587 | Canola | nucleus | 32.6 | 24.59 |
| CDY05133 | Canola | nucleus | 24.91 | 24.55 |
| CDX90774 | Canola | nucleus | 24.91 | 24.55 |
| CDY54340 | Canola | nucleus | 30.04 | 24.33 |
| CDY47066 | Canola | nucleus | 30.4 | 24.27 |
| CDX84990 | Canola | nucleus | 19.78 | 21.77 |
| CDY42104 | Canola | nucleus | 13.55 | 20.67 |
| CDY38591 | Canola | nucleus | 22.34 | 20.27 |
| CDY65135 | Canola | nucleus | 22.34 | 19.49 |
| CDX96010 | Canola | nucleus | 21.61 | 19.41 |
| CDY07380 | Canola | nucleus | 22.34 | 19.37 |
| CDY44887 | Canola | nucleus | 22.34 | 19.3 |
| CDY04234 | Canola | nucleus | 22.34 | 19.24 |
| CDY40978 | Canola | nucleus | 15.75 | 17.0 |
| CDX83568 | Canola | nucleus | 18.68 | 16.29 |
| CDY13596 | Canola | nucleus | 18.68 | 16.09 |
| CDX99741 | Canola | nucleus | 16.48 | 14.29 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078HU65 | UniProt:A0A078HU65 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY42030 | ProteinID:CDY42030 | ProteinID:CDY42030.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00074044001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF43 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI000189D145 | SEG:seg | : | : | : | : |
Description
BnaC04g01080DBnaC04g01080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU65]
Coordinates
chrLK032512:+:190008..190851
Molecular Weight (calculated)
30539.8 Da
IEP (calculated)
7.875
GRAVY (calculated)
-0.621
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSRERNVKY TVHRKLTSLT NQPINGCPKV VKITVTDPCA TDSSSDEETD DRFVSPAKRV KRYVEVIRFC DDNNKGASKR KKPTNKAAEP VKYRGVRRRP
101: WGKYAAEIRD PSKRARVWLG TFDTAEEAAI GYDRAAIRIK GRHALTNILT PPSSDDSAME ESRSSSIMRS PTSVLRFSGN EETGPINLSS AHQEAPAGFA
201: SPDPFFSPPE LFPARDCFWD SEIAPDPLFL DEFQLLPNSS TVSKLSESFP LGVIGDLSSC SWDVDEFFKD HLF
101: WGKYAAEIRD PSKRARVWLG TFDTAEEAAI GYDRAAIRIK GRHALTNILT PPSSDDSAME ESRSSSIMRS PTSVLRFSGN EETGPINLSS AHQEAPAGFA
201: SPDPFFSPPE LFPARDCFWD SEIAPDPLFL DEFQLLPNSS TVSKLSESFP LGVIGDLSSC SWDVDEFFKD HLF
001: MKSRVRKSKY TVHRKITSTP FDGFPKIVKI IVTDPCATDS SSDEENDNKS VAPRVKRYVD EIRFCDEDDE PKPARKAKKK SPAAAAENGG DLVKSVVKYR
101: GVRQRPWGKF AAEIRDPSSR TRLWLGTFAT AEEAAIGYDR AAIRIKGHNA QTNFLTPPPS PTTEVLPETP VIDLETVSGC DSARESQISL CSPTSVLRFS
201: HNDETEYRTE PTEEQNPFFL PDLFRSGDYF WDSEITPDPL FLDEFHQSLL PNINNNNTVC DKDTNLSDSF PLGVIGDFSS WDVDEFFQDH LLDK
101: GVRQRPWGKF AAEIRDPSSR TRLWLGTFAT AEEAAIGYDR AAIRIKGHNA QTNFLTPPPS PTTEVLPETP VIDLETVSGC DSARESQISL CSPTSVLRFS
201: HNDETEYRTE PTEEQNPFFL PDLFRSGDYF WDSEITPDPL FLDEFHQSLL PNINNNNTVC DKDTNLSDSF PLGVIGDFSS WDVDEFFQDH LLDK
Arabidopsis Description
CRF5Ethylene-responsive transcription factor CRF5 [Source:UniProtKB/Swiss-Prot;Acc:O82339]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.