Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10965 | Canola | nucleus | 88.53 | 93.92 |
| Bra019270.1-P | Field mustard | nucleus | 92.68 | 93.87 |
| CDY47623 | Canola | nucleus | 79.62 | 79.37 |
| CDY03521 | Canola | nucleus | 80.57 | 78.57 |
| AT4G23750.1 | Thale cress | nucleus | 77.07 | 70.55 |
| CDY05133 | Canola | nucleus | 47.77 | 54.15 |
| CDX90774 | Canola | nucleus | 47.77 | 54.15 |
| CDY12500 | Canola | nucleus | 24.2 | 49.03 |
| CDY41468 | Canola | nucleus | 24.52 | 48.73 |
| CDY70837 | Canola | nucleus | 22.61 | 48.3 |
| CDX91694 | Canola | nucleus | 24.52 | 47.83 |
| CDY49223 | Canola | nucleus | 24.52 | 46.67 |
| CDY09516 | Canola | nucleus | 24.2 | 46.34 |
| CDY66105 | Canola | nucleus | 24.52 | 46.11 |
| CDX68325 | Canola | nucleus | 24.2 | 46.06 |
| KRG92510 | Soybean | nucleus | 27.39 | 44.56 |
| KRH41287 | Soybean | nucleus | 38.85 | 41.64 |
| KRH27859 | Soybean | nucleus | 37.58 | 40.83 |
| KRH77624 | Soybean | nucleus | 37.26 | 39.26 |
| PGSC0003DMT400032058 | Potato | nucleus | 40.45 | 37.57 |
| Solyc08g081960.1.1 | Tomato | nucleus | 40.13 | 37.17 |
| KRH60010 | Soybean | nucleus | 38.85 | 36.53 |
| CDY11369 | Canola | nucleus | 30.57 | 33.92 |
| CDY61587 | Canola | nucleus | 38.53 | 33.43 |
| CDX71724 | Canola | nucleus | 30.57 | 33.33 |
| CDY47066 | Canola | nucleus | 35.99 | 33.04 |
| CDX80006 | Canola | nucleus | 28.03 | 32.71 |
| CDY42030 | Canola | nucleus | 28.34 | 32.6 |
| CDX96208 | Canola | nucleus | 35.67 | 32.09 |
| CDY54340 | Canola | nucleus | 34.39 | 32.05 |
| CDY49175 | Canola | nucleus | 35.67 | 31.91 |
| CDY29870 | Canola | nucleus | 32.8 | 31.69 |
| CDX92852 | Canola | nucleus | 32.48 | 31.48 |
| CDY53906 | Canola | nucleus | 28.34 | 31.34 |
| CDY71170 | Canola | nucleus | 33.44 | 31.16 |
| CDY52005 | Canola | nucleus | 28.34 | 31.01 |
| CDX95687 | Canola | nucleus | 24.52 | 30.32 |
| CDY71485 | Canola | nucleus | 32.48 | 30.27 |
| CDX97406 | Canola | nucleus | 31.21 | 29.88 |
| CDY14263 | Canola | nucleus | 30.57 | 29.27 |
| CDX84990 | Canola | nucleus | 20.7 | 26.21 |
| CDY42104 | Canola | nucleus | 14.33 | 25.14 |
| CDY04234 | Canola | nucleus | 22.93 | 22.71 |
| CDY38591 | Canola | nucleus | 21.34 | 22.26 |
| CDY07380 | Canola | nucleus | 22.29 | 22.22 |
| CDX96010 | Canola | nucleus | 21.34 | 22.04 |
| CDY44887 | Canola | nucleus | 21.97 | 21.84 |
| CDY13596 | Canola | nucleus | 21.97 | 21.77 |
| CDY40978 | Canola | nucleus | 17.52 | 21.74 |
| CDY65135 | Canola | nucleus | 21.66 | 21.73 |
| CDX83568 | Canola | nucleus | 21.66 | 21.73 |
| CDX99741 | Canola | nucleus | 19.11 | 19.05 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078DY02 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDX94215 | ProteinID:CDX94215 | ProteinID:CDX94215.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00157161001 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF42 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EC8763 | SEG:seg | : | : |
Description
BnaC07g38490D
Coordinates
chrLK031879:+:1391252..1392196
Molecular Weight (calculated)
34702.4 Da
IEP (calculated)
5.762
GRAVY (calculated)
-0.577
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPEKNLVLP PKIKFTEHKT NTTRTVPGFN NQHNQQPRII RISVTDPDAT DSSSDDEEET HQRFASKRRR IKKFVNEVVL DSGAASTGSS TQIEPKKRRN
101: RAVIVKPEPA SAPPEKKYRG VRQRPWGKWA AEIRDPLRRV RLWLGTFNTA EEAALVYDSA AIQLRGPDAL TNFSVPPPSS PKSPPPSPVK KKSKIKDDVA
201: SSSVSSDCLR SPVSVLRSPF TVDETSAVIV REEPSTTTAS ETFSDFSAPL FADDDLFDFR SDFLAGDLFG EDLFADACTG MSFGFDFGSG LSSWHVEDHF
301: QDIGDLFGSD PLAV
101: RAVIVKPEPA SAPPEKKYRG VRQRPWGKWA AEIRDPLRRV RLWLGTFNTA EEAALVYDSA AIQLRGPDAL TNFSVPPPSS PKSPPPSPVK KKSKIKDDVA
201: SSSVSSDCLR SPVSVLRSPF TVDETSAVIV REEPSTTTAS ETFSDFSAPL FADDDLFDFR SDFLAGDLFG EDLFADACTG MSFGFDFGSG LSSWHVEDHF
301: QDIGDLFGSD PLAV
001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV
Arabidopsis Description
CRF2Ethylene-responsive transcription factor CRF2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.