Factsheet for PGSC0003DMT400032058

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008290
PGSC0003DMT400020233
PGSC0003DMT400032058
PGSC0003DMT400051833
PGSC0003DMT400063187
PGSC0003DMT400081747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11140.1	PGSC0003DMT400008290	AT2G25180.1	21705390
AT4G11140.1	PGSC0003DMT400020233	AT2G25180.1	21705390
AT4G11140.1	PGSC0003DMT400081747	AT3G21510.1	21705390
AT4G11140.1	PGSC0003DMT400051833	AT3G29350.1	21705390
AT4G11140.1	PGSC0003DMT400032058	AT4G11140.1	21705390
AT4G11140.1	PGSC0003DMT400032058	AT4G23750.1	21705390
AT4G23750.1	PGSC0003DMT400063187	AT1G19050.1	21705390
AT4G23750.1	PGSC0003DMT400081747	AT3G21510.1	21705390
AT4G23750.1	PGSC0003DMT400032058	AT4G11140.1	21705390
AT4G23750.1	PGSC0003DMT400032058	AT4G23750.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081960.1.1	Tomato	nucleus	94.67	94.4
KRH27859	Soybean	nucleus	41.12	48.1
KRH77624	Soybean	nucleus	40.24	45.64
KRH41287	Soybean	nucleus	38.46	44.37
KRG92510	Soybean	nucleus	24.85	43.52
CDY10965	Canola	nucleus	36.98	42.23
Bra019270.1-P	Field mustard	nucleus	37.57	40.97
CDX94215	Canola	nucleus	37.57	40.45
KRH60010	Soybean	nucleus	39.65	40.12
AT4G11140.1	Thale cress	nucleus	34.02	40.07
Bra013730.1-P	Field mustard	nucleus	36.39	39.05
CDY47623	Canola	nucleus	36.39	39.05
PGSC0003DMT400078294	Potato	nucleus	28.4	38.71
AT4G23750.1	Thale cress	nucleus	39.05	38.48
PGSC0003DMT400085012	Potato	nucleus	15.68	38.13
CDY03521	Canola	nucleus	36.09	37.89
CDX90774	Canola	nucleus	30.18	36.82
PGSC0003DMT400006041	Potato	nucleus	40.53	36.63
Bra000736.1-P	Field mustard	nucleus	29.59	36.63
CDY05133	Canola	nucleus	29.88	36.46
PGSC0003DMT400091285	Potato	nucleus	15.68	36.05
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	39.94	34.7
PGSC0003DMT400000274	Potato	nucleus	28.99	32.67
PGSC0003DMT400089361	Potato	nucleus	11.83	32.26
PGSC0003DMT400086990	Potato	nucleus	10.36	27.34
PGSC0003DMT400097578	Potato	nucleus	14.5	25.0
PGSC0003DMT400037698	Potato	nucleus	22.19	21.8
PGSC0003DMT400041053	Potato	nucleus	21.89	20.9
PGSC0003DMT400058442	Potato	nucleus	19.53	19.19
PGSC0003DMT400014358	Potato	nucleus	18.34	15.94
PGSC0003DMT400089378	Potato	nucleus	12.72	12.65

Protein Annotations

EntrezGene:102599019	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1AWS3	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400012305	PGSC:PGSC0003DMG400012305	EnsemblPlants:PGSC0003DMT400032058	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294A70F
RefSeq:XP_006343893.1	SEG:seg	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012305]

Coordinates

chr8:+:55616683..55618295

Molecular Weight (calculated)

37460.4 Da

IEP (calculated)

5.031

GRAVY (calculated)

-0.635

Length

338 amino acids

Sequence
(BLAST)

001: MDQQTMLSSG VKYTEHRKQI TMVRASAPVS FTGRRRGSEM NAAGPRVVRI TVTDADATDS SSDEGEQRFY GRQRVRKFVN EVRIEQSSNC NGSVNGVLRN
101: GSSSETAPVV AAPPKRRKKN AGATTAASKL KVNNVKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDHA AIQLRGPDAL TNFATPPATK
201: TSCSGYNSGE ESHNDQRSPK SVLRCASTSF DESQNNEEAE AESLPILPSD IRDKNDISMS ENFCDFPPFE SFFPDDLFQF ENPVTISDLF EPITLPDCNN
301: MLFGSSTTDF GFGSSSWPEE DFFQDFGDVF GSDPLVAL

Best Arabidopsis Sequence Match ( AT4G23750.1 )
(BLAST)

001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV

Arabidopsis Description

CRF2Ethylene-responsive transcription factor CRF2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.