Factsheet for PGSC0003DMT400091285

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085012	Potato	nucleus	82.31	87.05
PGSC0003DMT400089361	Potato	nucleus	63.95	75.81
PGSC0003DMT400086990	Potato	nucleus	59.18	67.97
Solyc01g014720.1.1	Tomato	nucleus	74.83	63.22
PGSC0003DMT400097578	Potato	nucleus	42.86	32.14
PGSC0003DMT400058442	Potato	nucleus	70.07	29.94
KRH07295	Soybean	nucleus	43.54	23.36
KRH66264	Soybean	nucleus	43.54	22.61
PGSC0003DMT400078294	Potato	nucleus	38.1	22.58
KRG97126	Soybean	nucleus	37.41	18.77
PGSC0003DMT400000274	Potato	nucleus	38.1	18.67
KRH68876	Soybean	nucleus	37.41	18.27
PGSC0003DMT400089378	Potato	nucleus	38.78	16.76
PGSC0003DMT400006041	Potato	nucleus	41.5	16.31
PGSC0003DMT400032058	Potato	nucleus	36.05	15.68
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	39.46	14.91
PGSC0003DMT400037698	Potato	nucleus	30.61	13.08
PGSC0003DMT400041053	Potato	nucleus	30.61	12.71
PGSC0003DMT400014358	Potato	nucleus	29.93	11.31

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1DM95	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400040856	PGSC:PGSC0003DMG400040856	EnsemblPlants:PGSC0003DMT400091285	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002959FAD	SEG:seg	:	:	:	:

Description

AP2 domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400040856]

Coordinates

chr1:-:5257247..5257690

Molecular Weight (calculated)

16944.3 Da

IEP (calculated)

10.305

GRAVY (calculated)

-0.824

Length

147 amino acids

Sequence
(BLAST)

001: MGERSVVLPR VVRIYIMDND ATNSSSDEEE NFQGEKSKRH KRICKEIIIR NGKTKVTSKM VSSKEKKDTT LLQENAKKYR GVRLRKWERW VAEIRDVRTN
101: KRCWLGSFDT ALEASLAYDK ATIEIKGANA VTNIIETPSK ESNTIHQ

Best Arabidopsis Sequence Match ( AT3G61630.1 )
(BLAST)

001: MERRTRRVKF TENRTVTNVA ATPSNGSPRL VRITVTDPFA TDSSSDDDDN NNVTVVPRVK RYVKEIRFCQ GESSSSTAAR KGKHKEEESV VVEDDVSTSV
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD

Arabidopsis Description

CRF6CRF6 [Source:UniProtKB/TrEMBL;Acc:A0A178VFH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.