Factsheet for PGSC0003DMT400086922

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007460.1.1	Tomato	nucleus	90.49	88.89
PGSC0003DMT400006041	Potato	nucleus	56.56	58.82
VIT_16s0050g02400.t01	Wine grape	nucleus	46.53	53.08
KRH64510	Soybean	nucleus, plastid	37.53	45.06
KRH53432	Soybean	nucleus	38.82	42.78
PGSC0003DMT400085012	Potato	nucleus	15.17	42.45
PGSC0003DMT400032058	Potato	nucleus	34.7	39.94
PGSC0003DMT400091285	Potato	nucleus	14.91	39.46
KRH15980	Soybean	nucleus	32.13	38.23
PGSC0003DMT400089361	Potato	nucleus	11.83	37.1
PGSC0003DMT400078294	Potato	nucleus	23.65	37.1
PGSC0003DMT400086990	Potato	nucleus	12.08	36.72
KRH18134	Soybean	nucleus	30.85	35.82
PGSC0003DMT400000274	Potato	nucleus	26.99	35.0
PGSC0003DMT400097578	Potato	nucleus	14.65	29.08
PGSC0003DMT400058442	Potato	nucleus	18.25	20.64
PGSC0003DMT400037698	Potato	nucleus	17.48	19.77
PGSC0003DMT400041053	Potato	nucleus	16.71	18.36
PGSC0003DMT400014358	Potato	nucleus	17.22	17.22
PGSC0003DMT400089378	Potato	nucleus	12.6	14.41

Protein Annotations

EntrezGene:102591238	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1DCS9	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400036493	PGSC:PGSC0003DMG400036493	EnsemblPlants:PGSC0003DMT400086922	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF40	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294B887
RefSeq:XP_006350598.1	SEG:seg	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400036493]

Coordinates

chr3:-:48967738..48968907

Molecular Weight (calculated)

43409.3 Da

IEP (calculated)

4.420

GRAVY (calculated)

-0.654

Length

389 amino acids

Sequence
(BLAST)

001: MDHHLLCPIK YTEHRNVIRK VTKPSLVKSK KFPEATKSSQ FNPSVPRTVR ISVTDPDATD SSSDEEDMLF GRRRVKKYIN EISIETAVKC EVSIPNSGNG
101: KTVNKRAPEP LQTKQKPMKV QPPQSAGAVR KFRGVRQRPW GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIKLRG PDALTNFSTP PKPEPEPEPE
201: PEISVLSHSG YESGNESRNI PSPTSVLRFR MSQSESGSDP IHVSEECPSI QGSMECEQTV QPFVQCAAEP QLVQQDVEEC QGETSMIPDY SNDYLPTDIP
301: FLNDFFNFDG SAAEQTLFED STITSTTTTT PNCPNDFGSL YNDSLDFGND FLFNDADFAE FSNFDDLGMD DFSQDSVVDY SSVDSLLAI

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.