Factsheet for PGSC0003DMT400058442

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g008890.2.1	Tomato	nucleus	81.98	93.07
PGSC0003DMT400085012	Potato	nucleus	28.49	70.5
PGSC0003DMT400091285	Potato	nucleus	29.94	70.07
PGSC0003DMT400086990	Potato	nucleus	25.58	68.75
PGSC0003DMT400089361	Potato	nucleus	22.09	61.29
PGSC0003DMT400097578	Potato	nucleus	24.13	42.35
KRH07295	Soybean	nucleus	20.06	25.18
KRH66264	Soybean	nucleus	20.64	25.09
PGSC0003DMT400078294	Potato	nucleus	17.15	23.79
PGSC0003DMT400089378	Potato	nucleus	22.38	22.65
PGSC0003DMT400000274	Potato	nucleus	19.19	22.0
KRG97126	Soybean	nucleus	17.73	20.82
KRH68876	Soybean	nucleus	18.02	20.6
PGSC0003DMT400032058	Potato	nucleus	19.19	19.53
PGSC0003DMT400006041	Potato	nucleus	21.22	19.52
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	20.64	18.25
PGSC0003DMT400037698	Potato	nucleus	14.83	14.83
PGSC0003DMT400041053	Potato	nucleus	13.95	13.56
PGSC0003DMT400014358	Potato	nucleus	14.53	12.85

Protein Annotations

EntrezGene:102606272	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1C2N1	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400022695	PGSC:PGSC0003DMG400022695	EnsemblPlants:PGSC0003DMT400058442	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002948AA2
RefSeq:XP_006362748.1	RefSeq:XP_006362749.1	RefSeq:XP_015158628.1	SEG:seg	:	:

Description

Ethylene-responsive transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022695]

Coordinates

chr1:-:5291571..5298023

Molecular Weight (calculated)

39275.7 Da

IEP (calculated)

9.632

GRAVY (calculated)

-0.945

Length

344 amino acids

Sequence
(BLAST)

001: MASKDEHKEN EAVEEPSEIP RDEKSINPVG ESSVVLPRVV RIYMPDSDAT DSSSDEEEKL QGEKSKRHER TCIKEIIIEN GKTRVICKKT SKEKKDIKLF
101: QENAKKYKGV RQRRWGKWAA EIRDTKNKTR LWLGTFDTAE EAALAYDKAA IEIRAMTSKE DLQVKEGVIE PSAIDVVEKS SNQVGEISQV FPRLVRIHVP
201: DHDTTDSSSD EEEKDEEGKS EGHERTCVKE IIIENGKTKV ISKKKSKEKK DLNLMQEDVN KYRGVRRRKW GKWAAEIRDT RKKTRLWLGT FDTALEAALA
301: YDKAAIEIRG ANALTNILKP PAKKNNPIKI NFIVPPLKRQ KADP

Best Arabidopsis Sequence Match ( AT4G11140.1 )
(BLAST)

001: METEKKVSLP RILRISVTDP YATDSSSDEE EEVDFDALST KRRRVKKYVK EVVLDSVVSD KEKPMKKKRK KRVVTVPVVV TTATRKFRGV RQRPWGKWAA
101: EIRDPSRRVR VWLGTFDTAE EAAIVYDNAA IQLRGPNAEL NFPPPPVTEN VEEASTEVKG VSDFIIGGGE CLRSPVSVLE SPFSGESTAV KEEFVGVSTA
201: EIVVKKEPSF NGSDFSAPLF SDDDVFGFST SMSESFGGDL FGDNLFADMS FGSGFGFGSG SGFSSWHVED HFQDIGDLFG SDPVLTV

Arabidopsis Description

CRF1Ethylene-responsive transcription factor CRF1 [Source:UniProtKB/Swiss-Prot;Acc:O82503]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.