Factsheet for PGSC0003DMT400089378

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400097578	Potato	nucleus	39.12	67.86
PGSC0003DMT400085012	Potato	nucleus	16.47	40.29
PGSC0003DMT400091285	Potato	nucleus	16.76	38.78
PGSC0003DMT400086990	Potato	nucleus	12.94	34.38
PGSC0003DMT400089361	Potato	nucleus	11.47	31.45
PGSC0003DMT400058442	Potato	nucleus	22.65	22.38
KRH07295	Soybean	nucleus	14.41	17.88
KRH66264	Soybean	nucleus	14.12	16.96
PGSC0003DMT400078294	Potato	nucleus	11.47	15.73
KRH68876	Soybean	nucleus	13.53	15.28
KRG97126	Soybean	nucleus	12.94	15.02
PGSC0003DMT400000274	Potato	nucleus	12.65	14.33
PGSC0003DMT400006041	Potato	nucleus	14.71	13.37
PGSC0003DMT400032058	Potato	nucleus	12.65	12.72
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	14.41	12.6
PGSC0003DMT400037698	Potato	nucleus	9.12	9.01
PGSC0003DMT400041053	Potato	nucleus	8.53	8.19
PGSC0003DMT400014358	Potato	nucleus	8.24	7.2

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.2	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1DI15	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400038949	PGSC:PGSC0003DMG400038949	EnsemblPlants:PGSC0003DMT400089378	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296221C
SEG:seg	:	:	:	:	:

Description

AP2 domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400038949]

Coordinates

chr1:+:5192491..5196768

Molecular Weight (calculated)

38711.1 Da

IEP (calculated)

8.552

GRAVY (calculated)

-0.919

Length

340 amino acids

Sequence
(BLAST)

001: MRGPDAVTNI LKPPPREVQP MENNLINPPP KEINFMNLSS SSSNDARIVW ITDSSNEPTT YCDGLDLDLY ASSVPDCWMF VARISRKEGY QKTLKNDATK
101: KSTVQVEGSS SVQPNPAGVY LWGVNLMNVS NEDKEKVKEE KSKGRGKTRQ KKIITENENV EAISIENSKE KPQENVEKYK GVRQRKWGCD LMNPSNEEKG
201: KVKEEKSEQD EMTCEKEMIV KNNIENTDEI SIENSKGKQI KLPQKNVKKY KGVRQRKWVS EVQVPKMRNR IWLGMFDMSE EAALTYDKAV IEMRGPDAVT
301: NILKPPPREV QPMENNLINP LPKEINFMNL SSSSSNDARV

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.