Factsheet for PGSC0003DMT400014358

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119580.1.1	Tomato	nucleus	83.29	84.16
PGSC0003DMT400085012	Potato	nucleus	11.05	30.94
PGSC0003DMT400091285	Potato	nucleus	11.31	29.93
KRH39204	Soybean	nucleus	12.85	29.59
PGSC0003DMT400089361	Potato	nucleus	9.0	28.23
KRH48474	Soybean	nucleus	22.11	27.48
GSMUA_Achr4P06840_001	Banana	nucleus	16.97	25.98
GSMUA_Achr9P19330_001	Banana	mitochondrion	16.2	25.4
PGSC0003DMT400086990	Potato	nucleus	8.23	25.0
GSMUA_Achr4P13800_001	Banana	nucleus	17.22	24.63
PGSC0003DMT400037698	Potato	nucleus	19.79	22.38
PGSC0003DMT400078294	Potato	nucleus	14.14	22.18
PGSC0003DMT400041053	Potato	nucleus	20.05	22.03
GSMUA_Achr1P23090_001	Banana	nucleus	16.45	21.99
EER98690	Sorghum	nucleus	15.42	21.28
PGSC0003DMT400000274	Potato	nucleus	16.2	21.0
HORVU5Hr1G055190.2	Barley	nucleus	16.45	20.71
TraesCS5B01G178600.1	Wheat	nucleus	16.45	20.71
TraesCS5A01G180800.1	Wheat	nucleus	16.45	20.65
TraesCS5D01G185300.1	Wheat	nucleus	16.2	20.32
PGSC0003DMT400097578	Potato	nucleus	9.51	18.88
Os09t0309700-01	Rice	nucleus	15.17	18.55
PGSC0003DMT400032058	Potato	nucleus	15.94	18.34
OQU89260	Sorghum	nucleus	13.37	18.06
PGSC0003DMT400006041	Potato	nucleus	17.22	17.91
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	17.22	17.22
Zm00001d020043_P001	Maize	plastid	15.94	16.15
PGSC0003DMT400058442	Potato	nucleus	12.85	14.53
GSMUA_Achr10P...	Banana	vacuole	16.71	11.02
PGSC0003DMT400089378	Potato	nucleus	7.2	8.24

Protein Annotations

EntrezGene:102597156	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1A429	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400005631	PGSC:PGSC0003DMG400005631	EnsemblPlants:PGSC0003DMT400014358	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF1	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00029537F6
RefSeq:XP_015161718.1	SEG:seg	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005631]

Coordinates

chr3:-:58945294..58946919

Molecular Weight (calculated)

43841.2 Da

IEP (calculated)

5.554

GRAVY (calculated)

-0.542

Length

389 amino acids

Sequence
(BLAST)

001: MKLEKDVKRE RVMDGGISSV RKVRIIYDDP DATDSESDDD RFDKNVSRIK RVVKEIVIPV VSWEKEFKKC CKLDDIGIKD SKKIHENKKV QLKSSALPKG
101: VRMRKWGKYA AEIRDPSQGK RIWLGTFETV EAASQAYEAK RAEFDRIISL GKGKNLSSAP PAECSSHPIN GKNHVYSHPS PSSVLDVPTS SAAAPLESND
201: NPTRDMAQMP DSGFNLSFED QMLHEFINQG RQGISELMEH PLIEQGSISN SLVEMTQVNI KKKTITRPPT IPSCKKLTKG IEDHRNDKSI FSVLDKPPIM
301: SPCIRTELLN LNIEETAVMG NNLKLLGFDD NALFDKDLAQ TFDPYTDAIA LDSTFQCCDG WNECVYCKVF TDEVDLDEVD LRWLENVLL

Best Arabidopsis Sequence Match ( AT1G68550.1 )
(BLAST)

001: MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD DSSSDEEELK VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI
101: AVSASPAVPR KKPVGVRQRK WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK AYDAKKLEFD AIVAGNVSTT KRDVSSSETS QCSRSSPVVP VEQDDTSASA
201: LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ IPDFGFLAEE QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD
301: SSFGFLDQLA PINISCPLKS FAAS

Arabidopsis Description

ERF118Ethylene-responsive transcription factor ERF118 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.