Factsheet for PGSC0003DMT400097578

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400091285	Potato	nucleus	32.14	42.86
PGSC0003DMT400085012	Potato	nucleus	29.08	41.01
PGSC0003DMT400086990	Potato	nucleus	26.02	39.84
PGSC0003DMT400089378	Potato	nucleus	67.86	39.12
PGSC0003DMT400089361	Potato	nucleus	21.94	34.68
PGSC0003DMT400058442	Potato	nucleus	42.35	24.13
KRH07295	Soybean	nucleus	30.1	21.53
KRH66264	Soybean	nucleus	30.1	20.85
PGSC0003DMT400000274	Potato	nucleus	29.59	19.33
PGSC0003DMT400078294	Potato	nucleus	22.96	18.15
KRG97126	Soybean	nucleus	27.04	18.09
KRH68876	Soybean	nucleus	26.53	17.28
PGSC0003DMT400006041	Potato	nucleus	28.57	14.97
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	29.08	14.65
PGSC0003DMT400032058	Potato	nucleus	25.0	14.5
PGSC0003DMT400037698	Potato	nucleus	18.88	10.76
PGSC0003DMT400041053	Potato	nucleus	19.39	10.73
PGSC0003DMT400014358	Potato	nucleus	18.88	9.51

Protein Annotations

EntrezGene:107057963	Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1E0Y0	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400047149	PGSC:PGSC0003DMG400047149	EnsemblPlants:PGSC0003DMT400097578	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295C2A5
RefSeq:XP_015158623.1	:	:	:	:	:

Description

Ethylene-responsive transcription factor CRF4 [Source:PGSC_GENE;Acc:PGSC0003DMG400047149]

Coordinates

chr1:+:5188089..5188679

Molecular Weight (calculated)

22071.2 Da

IEP (calculated)

10.329

GRAVY (calculated)

-0.869

Length

196 amino acids

Sequence
(BLAST)

001: MTSKNKYHEK KVIRKPSKND ATKNSTVQVE GSSSIQPNPA RVYLWGVDLM NLSNHEDKGK VKEEKSKGRD KTRQKKIFSE NENVKAISIE NSKEKPQENV
101: EKYKGVRQRK WGKWVAEVYD PRTKGRIWLG TFNTAEEAAL VYNKAAIAIK GVNAVTNIIK PAPTDLPLAE ITSINPSSKE IDFMNLPSSS LDGDRI

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.