Factsheet for Solyc01g008890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058442	Potato	nucleus	93.07	81.98
Solyc01g014720.1.1	Tomato	nucleus	30.69	53.45
Solyc01g008880.1.1	Tomato	nucleus	28.71	43.72
KRH07295	Soybean	nucleus	20.46	22.63
KRH66264	Soybean	nucleus	21.12	22.61
Solyc06g082590.1.1	Tomato	nucleus	18.48	22.58
Solyc01g095500.2.1	Tomato	nucleus	20.13	20.82
KRG97126	Soybean	nucleus	18.48	19.11
KRH68876	Soybean	nucleus	18.81	18.94
Solyc06g051840.1.1	Tomato	nucleus	21.78	18.86
Solyc08g081960.1.1	Tomato	nucleus	19.14	17.11
Solyc03g007460.1.1	Tomato	nucleus	21.45	16.41
Solyc05g009450.1.1	Tomato	nucleus	15.18	13.49
Solyc04g007180.1.1	Tomato	nucleus	14.19	12.84
Solyc03g119580.1.1	Tomato	nucleus	15.84	12.47

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4AT85
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc01g008890.2	EnsemblPlants:Solyc01g008890.2.1	UniParc:UPI0002763323	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:2910164..2911724

Molecular Weight (calculated)

34803.5 Da

IEP (calculated)

10.319

GRAVY (calculated)

-1.031

Length

303 amino acids

Sequence
(BLAST)

001: MPDSDATDSS SDEEEKLQGE KSKRHKRTCI KEIIIENGKT RVISKKTSKE KKDIKMFQEN AKKYKGVRQR RWGKWAAEIR DTKNKTRLWL GSFDTAEEAA
101: LAYDKAAIEI RAMTPKEELQ VKEGVKEPSV IALVEKSSNQ VGEISQVFPR LVRIHAPDHD TTDSSSDEEE KDEEEKSEGH ERTCVKEIII ENGKTKDISK
201: KKSKEKKASN LMQEDVNKYR GVRRRKWGKW AAEIRDTRKK TRLWLGTFDT ALEAALAYDK AAIEIRGANA LTNILKPPPK KNNPIKINFI VPPLKRQKNS
301: RFI

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.