Factsheet for Solyc06g051840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006041	Potato	nucleus	90.0	84.22
Solyc03g007460.1.1	Tomato	nucleus	60.57	53.54
VIT_16s0050g02400.t01	Wine grape	nucleus	48.0	49.27
KRH64510	Soybean	nucleus, plastid	41.14	44.44
KRH53432	Soybean	nucleus	42.86	42.49
KRH15980	Soybean	nucleus	36.86	39.45
Solyc08g081960.1.1	Tomato	nucleus	38.0	39.23
Solyc01g014720.1.1	Tomato	nucleus	19.14	38.51
KRH18134	Soybean	nucleus	36.29	37.91
Solyc06g082590.1.1	Tomato	nucleus	26.57	37.5
Solyc01g095500.2.1	Tomato	nucleus	29.71	35.49
Solyc01g008880.1.1	Tomato	nucleus	18.86	33.17
Solyc01g008890.2.1	Tomato	nucleus	18.86	21.78
Solyc05g009450.1.1	Tomato	nucleus	20.0	20.53
Solyc04g007180.1.1	Tomato	nucleus	17.71	18.51
Solyc03g119580.1.1	Tomato	nucleus	18.29	16.62

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4C5X3
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF40	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc06g051840.1	EnsemblPlants:Solyc06g051840.1.1	UniParc:UPI0002767285	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:35553671..35554723

Molecular Weight (calculated)

39356.5 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.678

Length

350 amino acids

Sequence
(BLAST)

001: MDHHSSLCPI KYTEHKRTIR KVTKPSVIKP KKVSDVRKSS EYNPRTVRIC VTDPDATDSS SDEDELFGRK RVKRYISEIS IESPSVNDVK TLSSGNGKKR
101: VAEGSQAKQK ALKGKEVADK TVRKFRGVRQ RPWGKWAAEI RDPARRVRLW LGTYDTAEEA AMVYDNAAIK LRGPDALTNF ITPPIKEKPE VNVASNSGYE
201: SGDESHNLSS PTSVLRFRSS ESSEEAEPGL EDIKENCTVL VEEEPNSEHL ECQGETLTVI PDYSNDYLPT DVSFLDDYFN FADAEQSLFN DTTSFTNDDL
301: FSSWDFTNDS VLDPEICKFD DSFLDLGALE VDNYFKDIGD FSSVDVLMAL

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.