CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53432	Soybean	nucleus	89.2	81.87
KRH63038	Soybean	nucleus	18.52	49.18
KRG92510	Soybean	nucleus	28.4	47.67
VIT_16s0050g02400.t01	Wine grape	nucleus	49.07	46.63
KRH15980	Soybean	nucleus	45.06	44.65
KRH27859	Soybean	nucleus	39.2	43.94
KRH41287	Soybean	nucleus	38.58	42.66
KRH77624	Soybean	nucleus	39.2	42.62
KRH18134	Soybean	nucleus	43.52	42.09
Solyc06g051840.1.1	Tomato	nucleus	44.44	41.14
PGSC0003DMT400006041	Potato	nucleus	45.06	39.04
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	45.06	37.53
KRH60010	Soybean	nucleus	38.58	37.43
KRH07295	Soybean	nucleus	31.48	37.23
Solyc03g007460.1.1	Tomato	nucleus	42.9	35.1
KRH66264	Soybean	nucleus	30.25	34.63
KRH68876	Soybean	nucleus	30.56	32.89
KRG97126	Soybean	nucleus	29.63	32.76
KRH72836	Soybean	nucleus	27.16	32.47
KRH41626	Soybean	nucleus	16.05	31.52
KRH17205	Soybean	nucleus	26.85	30.85
KRH30664	Soybean	nucleus	25.62	30.51
KRH39204	Soybean	nucleus	12.96	24.85
KRG98122	Soybean	nucleus	17.59	24.68
KRH48474	Soybean	nucleus	22.22	23.0
KRH43430	Soybean	nucleus	23.15	22.19
KRH35957	Soybean	nucleus	23.46	21.41
KRG90812	Soybean	nucleus	24.07	21.2
KRH75373	Soybean	nucleus, plastid	23.77	20.75
KRH45262	Soybean	nucleus	23.15	20.6
KRH04558	Soybean	nucleus	21.91	19.14

Protein Annotations

EntrezGene:100811972	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:ACUP02002767	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_04G238700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1JYV5	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH64510	ProteinID:KRH64510	ProteinID:KRH64510.1
EMBL:KT031078	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF40
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233A376	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:50730955..50732677

Molecular Weight (calculated)

36402.5 Da

IEP (calculated)

4.949

GRAVY (calculated)

-0.628

Length

324 amino acids

Sequence
(BLAST)

001: MEDSILCKHT VHRSVTKKLI SPKKSSQTNS STQTERRIVR ISYTDPDATD SSSDEEGFPL VRKRMKRYVN QIEIETAAEK VVRKRPAGEP CRRPAKLHSG
101: KKFRGVRQRP WGKWAAEIRD PARRVRLWLG TYDTAEEAAM VYDNAAIRLR GPDALTNFLT PPQRESPSQA TTVAVTEEAS GSGYDSGDDH CQHNLSSPTS
201: VLHFRSNSES DQKSEQVLRE CEGEGEFLAL DNMPLPAWDE VFNFETPEYP PLLFQEGNFL HDYQSQMLGE TVPFSSDQGF SDSSIVLADS LIDFDKACPP
301: PSTLCQVDDF FQDILLASDP LVLL

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.