CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15980	Soybean	nucleus	75.52	77.37
KRG92510	Soybean	nucleus	25.97	45.08
KRH63038	Soybean	nucleus	16.12	44.26
KRH64510	Soybean	nucleus, plastid	42.09	43.52
KRH53432	Soybean	nucleus	43.88	41.64
VIT_16s0050g02400.t01	Wine grape	nucleus	40.3	39.59
KRH41287	Soybean	nucleus	34.33	39.25
KRH27859	Soybean	nucleus	33.73	39.1
KRH77624	Soybean	nucleus	34.33	38.59
KRH07295	Soybean	nucleus	30.15	36.86
Solyc06g051840.1.1	Tomato	nucleus	37.91	36.29
KRH60010	Soybean	nucleus	35.52	35.63
KRH66264	Soybean	nucleus	28.96	34.28
PGSC0003DMT400006041	Potato	nucleus	37.01	33.16
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	35.82	30.85
Solyc03g007460.1.1	Tomato	nucleus	35.82	30.3
KRH68876	Soybean	nucleus	27.16	30.23
KRG97126	Soybean	nucleus	26.27	30.03
KRH30664	Soybean	nucleus	24.18	29.78
KRH72836	Soybean	nucleus	23.88	29.52
KRH41626	Soybean	nucleus	14.33	29.09
KRH17205	Soybean	nucleus	23.88	28.37
KRH39204	Soybean	nucleus	12.54	24.85
KRG98122	Soybean	nucleus	16.12	23.38
KRH48474	Soybean	nucleus	20.9	22.36
KRH75373	Soybean	nucleus, plastid	24.18	21.83
KRH43430	Soybean	nucleus	21.79	21.6
KRH45262	Soybean	nucleus	23.28	21.43
KRH35957	Soybean	nucleus	22.39	21.13
KRG90812	Soybean	nucleus	22.99	20.92
KRH04558	Soybean	nucleus	21.19	19.14

Protein Annotations

EntrezGene:100801199	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02008039	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_13G040400	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1LX81	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH18134
ProteinID:KRH18134	ProteinID:KRH18134.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194
PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00023CF60D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:12875981..12877773

Molecular Weight (calculated)

38538.5 Da

IEP (calculated)

5.245

GRAVY (calculated)

-0.624

Length

335 amino acids

Sequence
(BLAST)

001: MEPQNRSNSI LCKYTEHETV TKKHMKSKNN TSLSPKVISI LMTDQYATDS SSDEERVTSR RRIKRYVNRI ELQPAIKSVA TRKRHVGDAT KLRPPQVKVK
101: NSGSVKKFRG VRQRPWGKWA AEIRDPVQRV RIWLGTFETA EEAALCYDNA AIMLRGPDAL TNFGIRSKET LEKEERKELD EKEEIRTEKP EMKVVVKPEI
201: ETALVSCFYD SADEFCLNLS SPTSVLRFNE SAELEKQYEP FPGRTEAHTV LEECQGQTVS FHESSEFMLQ DMPWDDVFNF PVMFDEPVSH LFDETTRFSS
301: SEVFSEEKFL PSATLCQVDD YFQDILLGSD PLVAL

Best Arabidopsis Sequence Match ( AT5G53290.1 )
(BLAST)

001: MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGGKSLKKVS ICYTDPDATD SSSDEDEEDF LFPRRRVKRF VNEITVEPSC NNVVTGVSMK DRKRLSSSSD
101: ETQSPASSRQ RPNNKVSVSG QIKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF SIPPQEEEEE EEPEPVIEEK
201: PVIMTTPTPT TSSSESTEED LQHLSSPTSV LNHRSEEIQQ VQQPFKSAKP EPGVSNAPWW HTGFNTGLGE SDDSFPLDTP FLDNYFNESP PEMSIFDQPM
301: DQIFCENDDI FNDMLFLGGE TMNIEDELTS SSIKDMGSTF SDFDDSLISD LLVA

Arabidopsis Description

CRF3Ethylene-responsive transcription factor CRF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.