Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400085012 | Potato | nucleus | 64.37 | 80.58 |
| PGSC0003DMT400086990 | Potato | nucleus | 58.62 | 79.69 |
| PGSC0003DMT400091285 | Potato | nucleus | 63.22 | 74.83 |
| PGSC0003DMT400089361 | Potato | nucleus | 50.0 | 70.16 |
| Solyc01g008880.1.1 | Tomato | nucleus | 58.62 | 51.26 |
| Solyc01g008890.2.1 | Tomato | nucleus | 53.45 | 30.69 |
| Solyc06g082590.1.1 | Tomato | nucleus | 36.21 | 25.4 |
| KRH07295 | Soybean | nucleus | 37.36 | 23.72 |
| KRH66264 | Soybean | nucleus | 37.93 | 23.32 |
| Solyc01g095500.2.1 | Tomato | nucleus | 33.33 | 19.8 |
| KRG97126 | Soybean | nucleus | 33.33 | 19.8 |
| KRH68876 | Soybean | nucleus | 33.91 | 19.6 |
| Solyc06g051840.1.1 | Tomato | nucleus | 38.51 | 19.14 |
| Solyc08g081960.1.1 | Tomato | nucleus | 34.48 | 17.7 |
| Solyc03g007460.1.1 | Tomato | nucleus | 38.51 | 16.92 |
| Solyc05g009450.1.1 | Tomato | nucleus | 28.16 | 14.37 |
| Solyc04g007180.1.1 | Tomato | nucleus | 24.71 | 12.84 |
| Solyc03g119580.1.1 | Tomato | nucleus | 28.16 | 12.73 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:K4AUA8 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF43 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc01g014720.1 | EnsemblPlants:Solyc01g014720.1.1 | UniParc:UPI00027624E9 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:+:14595809..14596333
Molecular Weight (calculated)
19846.5 Da
IEP (calculated)
10.156
GRAVY (calculated)
-0.955
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKDELHEN EVVKNQSKDA RGNKTNLMGD CSVVLQRVVR IYITDNDATD SSSDEEENHQ GENSKRQKRI CKEIIIKNGK TNVTSKMVSS KEKNVTKTHQ
101: ENVKKYRGVR QRKWGSWVAE IRDIRINKRR WLGSFATAYE AALAYDKAAI EIKGPNALTN ILKPPPKEID PINH
101: ENVKKYRGVR QRKWGSWVAE IRDIRINKRR WLGSFATAYE AALAYDKAAI EIKGPNALTN ILKPPPKEID PINH
001: MERRTRRVKF TENRTVTNVA ATPSNGSPRL VRITVTDPFA TDSSSDDDDN NNVTVVPRVK RYVKEIRFCQ GESSSSTAAR KGKHKEEESV VVEDDVSTSV
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD
Arabidopsis Description
CRF6CRF6 [Source:UniProtKB/TrEMBL;Acc:A0A178VFH2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.