Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013730.1-P | Field mustard | nucleus | 92.86 | 94.92 |
| CDY47623 | Canola | nucleus | 92.86 | 94.92 |
| CDY10965 | Canola | nucleus | 74.84 | 81.42 |
| CDX94215 | Canola | nucleus | 78.57 | 80.57 |
| AT4G23750.1 | Thale cress | nucleus | 75.47 | 70.85 |
| CDY05133 | Canola | nucleus | 45.65 | 53.07 |
| CDX90774 | Canola | nucleus | 44.72 | 51.99 |
| CDY41468 | Canola | nucleus | 24.53 | 50.0 |
| CDY12500 | Canola | nucleus | 23.6 | 49.03 |
| CDY70837 | Canola | nucleus | 22.05 | 48.3 |
| CDX91694 | Canola | nucleus | 23.91 | 47.83 |
| CDY09516 | Canola | nucleus | 24.22 | 47.56 |
| CDY66105 | Canola | nucleus | 24.22 | 46.71 |
| CDY49223 | Canola | nucleus | 23.91 | 46.67 |
| KRG92510 | Soybean | nucleus | 27.64 | 46.11 |
| CDX68325 | Canola | nucleus | 23.6 | 46.06 |
| KRH27859 | Soybean | nucleus | 36.65 | 40.83 |
| KRH41287 | Soybean | nucleus | 36.65 | 40.27 |
| KRH77624 | Soybean | nucleus | 36.34 | 39.26 |
| PGSC0003DMT400032058 | Potato | nucleus | 37.89 | 36.09 |
| Solyc08g081960.1.1 | Tomato | nucleus | 37.89 | 35.99 |
| KRH60010 | Soybean | nucleus | 37.27 | 35.93 |
| CDX80006 | Canola | nucleus | 27.33 | 32.71 |
| CDY11369 | Canola | nucleus | 28.57 | 32.51 |
| CDY47066 | Canola | nucleus | 34.47 | 32.46 |
| CDX71724 | Canola | nucleus | 28.88 | 32.29 |
| CDX95687 | Canola | nucleus | 25.47 | 32.28 |
| CDY42030 | Canola | nucleus | 27.33 | 32.23 |
| CDY54340 | Canola | nucleus | 33.23 | 31.75 |
| CDY52005 | Canola | nucleus | 28.26 | 31.71 |
| CDY53906 | Canola | nucleus | 27.95 | 31.69 |
| CDY61587 | Canola | nucleus | 35.4 | 31.49 |
| CDX92852 | Canola | nucleus | 31.68 | 31.48 |
| CDY29870 | Canola | nucleus | 31.68 | 31.38 |
| CDX96208 | Canola | nucleus | 33.85 | 31.23 |
| CDY71170 | Canola | nucleus | 32.61 | 31.16 |
| CDY49175 | Canola | nucleus | 33.85 | 31.05 |
| CDY71485 | Canola | nucleus | 32.3 | 30.86 |
| CDY14263 | Canola | nucleus | 30.12 | 29.57 |
| CDX97406 | Canola | nucleus | 30.12 | 29.57 |
| CDX84990 | Canola | nucleus | 20.19 | 26.21 |
| CDY42104 | Canola | nucleus | 13.66 | 24.58 |
| CDY04234 | Canola | nucleus | 22.36 | 22.71 |
| CDY65135 | Canola | nucleus | 22.05 | 22.68 |
| CDY07380 | Canola | nucleus | 22.05 | 22.54 |
| CDY44887 | Canola | nucleus | 21.74 | 22.15 |
| CDY38591 | Canola | nucleus | 20.5 | 21.93 |
| CDY40978 | Canola | nucleus | 17.08 | 21.74 |
| CDX96010 | Canola | nucleus | 20.5 | 21.71 |
| CDX83568 | Canola | nucleus | 20.81 | 21.41 |
| CDY13596 | Canola | nucleus | 20.81 | 21.14 |
| CDX99741 | Canola | nucleus | 18.94 | 19.37 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078EQS1 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY03521 | ProteinID:CDY03521 | ProteinID:CDY03521.1 | ncoils:Coil | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00116207001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 |
| PANTHER:PTHR31194:SF42 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EBC1FB | SEG:seg | : |
Description
BnaC01g15610D
Coordinates
chrLK031943:-:1033580..1034548
Molecular Weight (calculated)
35480.2 Da
IEP (calculated)
4.876
GRAVY (calculated)
-0.591
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTEKQLVLP KIKFAEHKTN TIPELTTNHH QPRILRISVA DPDATDSSSD EEEEEEQRLA SKRRRIKKFV NEVVLDTGAS GCSSQIESKK RRKRAVTVKS
101: EPASPPAVAT TTEKKYRGVR QRPWGKWAAE IRDPLRRVRL WLGTFNTAEE AALVYDSAAI QLRGPDALTN FPTTENKSSS PPPSPVKRKR KIKDDVASSS
201: TSSDGLCSPV SVLRSPFAVD ETSGSSTPTA AVIVKEEPST TTASETFSDF SAPLFTDEDL FDFRSSVVPD YLGGDLFGED LFADTCTDMN LGFDFGSGLS
301: DWHVDDHFQD IGDLFGSDPM TV
101: EPASPPAVAT TTEKKYRGVR QRPWGKWAAE IRDPLRRVRL WLGTFNTAEE AALVYDSAAI QLRGPDALTN FPTTENKSSS PPPSPVKRKR KIKDDVASSS
201: TSSDGLCSPV SVLRSPFAVD ETSGSSTPTA AVIVKEEPST TTASETFSDF SAPLFTDEDL FDFRSSVVPD YLGGDLFGED LFADTCTDMN LGFDFGSGLS
301: DWHVDDHFQD IGDLFGSDPM TV
001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV
Arabidopsis Description
CRF2Ethylene-responsive transcription factor CRF2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.