Factsheet for Bra003068.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000736.1-P
Bra003068.1-P
Bra003462.1-P
Bra004548.1-P
Bra010389.1-P
Bra012352.1-P
Bra016367.1-P
Bra022643.1-P
Bra026295.1-P
Bra029079.1-P
Bra040839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53290.1	Bra012352.1-P	AT1G22985.1	21705390
AT5G53290.1	Bra016367.1-P	AT1G22985.1	21705390
AT5G53290.1	Bra004548.1-P	AT2G46310.1	21705390
AT5G53290.1	Bra003462.1-P	AT3G61630.1	21705390
AT5G53290.1	Bra000736.1-P	AT4G11140.1	21705390
AT5G53290.1	Bra010389.1-P	AT4G27950.1	21705390
AT5G53290.1	Bra026295.1-P	AT4G27950.1	21705390
AT5G53290.1	Bra040839.1-P	AT4G27950.1	21705390
AT5G53290.1	Bra003068.1-P	AT5G53290.1	21705390
AT5G53290.1	Bra022643.1-P	AT5G53290.1	21705390
AT5G53290.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61587	Canola	nucleus	94.23	94.75
Bra022643.1-P	Field mustard	nucleus	82.42	85.23
Bra029079.1-P	Field mustard	nucleus	75.55	80.17
AT5G53290.1	Thale cress	nucleus	75.82	77.97
Bra010389.1-P	Field mustard	nucleus	45.33	50.3
Bra026295.1-P	Field mustard	nucleus	46.15	49.85
Bra040839.1-P	Field mustard	nucleus	43.68	48.92
Bra012352.1-P	Field mustard	nucleus	18.96	46.94
Bra016367.1-P	Field mustard	nucleus	20.33	46.84
Bra007963.1-P	Field mustard	nucleus	21.43	46.71
Bra003936.1-P	Field mustard	nucleus	20.6	45.45
Bra019270.1-P	Field mustard	nucleus	33.52	39.35
Bra000736.1-P	Field mustard	nucleus	28.57	38.1
Bra003462.1-P	Field mustard	nucleus	28.57	36.75
Bra013730.1-P	Field mustard	nucleus	31.32	36.19
Bra004548.1-P	Field mustard	nucleus	25.82	34.94
Bra033923.1-P	Field mustard	nucleus	19.78	22.78
Bra036360.1-P	Field mustard	nucleus	17.31	22.42
Bra004033.1-P	Field mustard	nucleus	19.51	22.4
Bra004318.1-P	Field mustard	nucleus	18.41	22.04
Bra025170.1-P	Field mustard	nucleus	18.68	21.38
Bra024743.1-P	Field mustard	plastid	17.58	19.16

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra003068	EnsemblPlants:Bra003068.1
EnsemblPlants:Bra003068.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CFT6	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF40	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002543AF1	SEG:seg

Description

AT5G53290 (E=9e-112) CRF3 | CRF3 (CYTOKININ RESPONSE FACTOR 3); DNA binding / transcription factor

Coordinates

chrA10:-:5480242..5481336

Molecular Weight (calculated)

41353.5 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.863

Length

364 amino acids

Sequence
(BLAST)

001: MMEEYFDFRP LKYTEHKTSV TKYTKKSPAK NPSGETRPDS VRIVRVSVTD HYATDSSSDE EEEEDFLFPR RRVKRFVNEI KVEPACNNNN INTTGVSMKD
101: RKRLSDETQS PATSRHRRPL KVSIPSAHNG RKFRGVRQRP WGKWAAEIRD PEQRRRIWLG TFETAEEAAV VYDNAAIRLR GPDALTNFSI PPQSQEEEEE
201: EPENPVIDKP ENNITTTTTT TTTSSSESTE DFQHLSSPTS VLNIRPSEDI QQPFKSAKPE PETSDAPWWH TGFSSGSGES DDSFPLDTPF LDSYFNESPP
301: EISVFDQPMG QVFSENEDIF NDMFLGGESM MMNIGEEFTS SSIKDIGSMF SDFDDSLISD LLLV

Best Arabidopsis Sequence Match ( AT5G53290.1 )
(BLAST)

001: MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGGKSLKKVS ICYTDPDATD SSSDEDEEDF LFPRRRVKRF VNEITVEPSC NNVVTGVSMK DRKRLSSSSD
101: ETQSPASSRQ RPNNKVSVSG QIKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF SIPPQEEEEE EEPEPVIEEK
201: PVIMTTPTPT TSSSESTEED LQHLSSPTSV LNHRSEEIQQ VQQPFKSAKP EPGVSNAPWW HTGFNTGLGE SDDSFPLDTP FLDNYFNESP PEMSIFDQPM
301: DQIFCENDDI FNDMLFLGGE TMNIEDELTS SSIKDMGSTF SDFDDSLISD LLVA

Arabidopsis Description

CRF3Ethylene-responsive transcription factor CRF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.