Factsheet for GSMUA_Achr7P10720_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28840_001	Banana	nucleus	60.54	61.36
GSMUA_Achr7P14200_001	Banana	nucleus	57.19	59.58
GSMUA_Achr6P14240_001	Banana	nucleus	53.18	56.79
GSMUA_Achr10P...	Banana	nucleus	53.85	56.1
GSMUA_Achr10P...	Banana	nucleus	51.84	52.9
GSMUA_Achr10P...	Banana	nucleus	52.51	51.31
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	53.18	50.96
GSMUA_Achr8P19850_001	Banana	nucleus	55.52	49.7
GSMUA_Achr2P19950_001	Banana	nucleus	42.14	46.15
GSMUA_Achr6P32030_001	Banana	nucleus	36.45	37.98
GSMUA_Achr9P05260_001	Banana	nucleus	36.12	36.99
GSMUA_Achr4P16600_001	Banana	nucleus	29.43	35.63
GSMUA_Achr7P21980_001	Banana	nucleus	29.1	35.22
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	31.1	34.44
GSMUA_Achr8P01690_001	Banana	nucleus	29.77	31.9
GSMUA_Achr9P19330_001	Banana	mitochondrion	20.07	24.19
GSMUA_Achr4P06840_001	Banana	nucleus	19.4	22.83
GSMUA_Achr4P13800_001	Banana	nucleus	19.73	21.69
GSMUA_Achr1P23090_001	Banana	nucleus	19.73	20.27
GSMUA_Achr10P...	Banana	vacuole	21.4	10.85

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G10720_001	EnsemblPlants:GSMUA_Achr7P10720_001	EnsemblPlants:GSMUA_Achr7T10720_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TGG0	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002955650	SEG:seg

Description

Putative AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G10720_001]

Coordinates

chr7:+:8583887..8584927

Molecular Weight (calculated)

32805.4 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.465

Length

299 amino acids

Sequence
(BLAST)

001: MASGVKRSEA CGFIPLLLRA MEATPSLPVV RGEHVDVIRK PLSSLPAPRT VRFFCDDFDA TDSSGDDDEL PCQSRRVRRY VQEIRFEARP SSAGRSNKGM
101: KAVPARKRKA PVAGEGAAGE GDGSVKRFRG VRRRPWGKFA AEIRDPWRRV RVWLGTFNTA EEAAKVYDSA AIQLRGPSAT TNFSRPTAAA ASPPKKNRSD
201: NNLASVSDAC DSSDDLLKEL GDFPPFQEVP ALFDEFLDTW DSEPSYFGDS APIGNLAEEM TDALIGPKLD LDFLSSTWQN ADYFEDIGDL FPIDALPAL

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.