Factsheet for TraesCS5A01G468800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G468800.1
TraesCS5B01G481300.1
TraesCS5D01G481700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22985.1	TraesCS5A01G468800.1	AT1G22985.1	21705390
AT1G22985.1	TraesCS5B01G481300.1	AT1G22985.1	21705390
AT1G22985.1	TraesCS5D01G481700.1	AT1G22985.1	21705390
AT1G22985.1	TraesCS5A01G468800.1	AT1G71130.1	21705390
AT1G22985.1	TraesCS5B01G481300.1	AT1G71130.1	21705390
AT1G22985.1	TraesCS5D01G481700.1	AT1G71130.1	21705390
AT1G71130.1	TraesCS5A01G468800.1	AT1G22985.1	21705390
AT1G71130.1	TraesCS5B01G481300.1	AT1G22985.1	21705390
AT1G71130.1	TraesCS5D01G481700.1	AT1G22985.1	21705390
AT1G71130.1	TraesCS5A01G468800.1	AT1G71130.1	21705390
AT1G71130.1	TraesCS5B01G481300.1	AT1G71130.1	21705390
AT1G71130.1	TraesCS5D01G481700.1	AT1G71130.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G481300.1	Wheat	nucleus	92.54	95.44
TraesCS5D01G481700.1	Wheat	nucleus	81.49	92.77
HORVU5Hr1G111550.1	Barley	nucleus	79.56	85.71
Os03t0815800-01	Rice	nucleus	38.4	57.68
EER90653	Sorghum	nucleus	37.29	56.25
Zm00001d034605_P001	Maize	nucleus	35.91	54.62
Zm00001d005203_P001	Maize	nucleus	33.7	41.92
Zm00001d019216_P001	Maize	nucleus	28.73	39.85
KXG34718	Sorghum	nucleus	35.36	37.21
CDY70837	Canola	nucleus	13.81	34.01
Bra012352.1-P	Field mustard	nucleus	13.81	34.01
CDY09516	Canola	nucleus	14.36	31.71
CDX68325	Canola	nucleus	14.36	31.52
CDY49223	Canola	nucleus	14.36	31.52
Bra003936.1-P	Field mustard	nucleus	14.36	31.52
CDY66105	Canola	nucleus	14.36	31.14
Bra007963.1-P	Field mustard	nucleus	14.36	31.14
CDY12500	Canola	nucleus	13.26	30.97
AT1G22985.1	Thale cress	nucleus	13.54	30.82
AT1G71130.1	Thale cress	nucleus	13.54	30.43
CDY41468	Canola	nucleus	13.26	30.38
CDX91694	Canola	nucleus	12.98	29.19
Bra016367.1-P	Field mustard	nucleus	12.71	29.11
TraesCS5A01G424600.1	Wheat	nucleus, plastid	20.72	25.68
TraesCS4A01G193100.1	Wheat	nucleus	17.68	20.71
TraesCS3A01G238300.1	Wheat	nucleus	16.85	20.68
TraesCS7A01G120100.1	Wheat	nucleus	16.02	18.24
TraesCS3A01G149000.1	Wheat	nucleus	16.3	16.81
TraesCS5A01G180800.1	Wheat	nucleus	13.26	15.48

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF82
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5A01G468800	EnsemblPlants:TraesCS5A01G468800.1	TIGR:cd00018	SEG:seg

Description

No Description!

Coordinates

chr5A:-:646009881..646010969

Molecular Weight (calculated)

38178.4 Da

IEP (calculated)

9.291

GRAVY (calculated)

-0.600

Length

362 amino acids

Sequence
(BLAST)

001: MGPNPSLDML AAAAGMESAA AAAAAAEAEA EAEAAEAQPR GRVVRIIVHD ADATDSSSSE DESAPPPLAP MPTTKEERRR ERKKRRRVME AGRRDDSGPP
101: QPQATGARTP SVRYRGVRQR RWGKFASEIR DPIQGRRLWL GTFDTAEEAA AAYDAAKIRI SGSRRPADGA TGFPFSFPPP EPAKPTVLRL PMPQPAKPTI
201: LRLPMPQPAK QITSPPPPPP PPEPAKPAIS PPPLPAKPFA LPLKLRLKLS FNAQVKDKGW NWCSAGDVKE EEDGDCDGEA KVGDLSIAGE VKVEGGGCAG
301: EVKVEGGGCA DGSKEAGSSS EVKAVKPMWA MITGKRKKRS GCGTRVGALH ASSVCVEEVG GT

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.