Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011785_P001 | Maize | nucleus | 63.03 | 68.49 |
| Zm00001d041960_P001 | Maize | nucleus | 73.95 | 68.22 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 69.33 | 60.22 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 69.75 | 58.25 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 68.49 | 58.01 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 69.75 | 57.84 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 49.58 | 51.53 |
| GSMUA_Achr10P... | Banana | nucleus | 55.04 | 46.95 |
| Solyc06g005680.2.1 | Tomato | nucleus | 51.68 | 46.24 |
| CDX68392 | Canola | nucleus | 50.84 | 46.18 |
| CDX82988 | Canola | nucleus | 49.58 | 45.56 |
| CDY61256 | Canola | nucleus | 50.84 | 44.16 |
| Bra033809.1-P | Field mustard | nucleus | 51.68 | 43.16 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 56.3 | 43.09 |
| KRH24748 | Soybean | nucleus | 55.04 | 42.81 |
| PGSC0003DMT400005490 | Potato | nucleus | 54.2 | 42.72 |
| CDX99104 | Canola | nucleus | 51.68 | 42.41 |
| Bra018204.1-P | Field mustard | nucleus | 52.94 | 41.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.94 | 41.31 |
| AT5G59570.2 | Thale cress | nucleus | 51.68 | 41.28 |
| KRH29751 | Soybean | nucleus | 55.88 | 41.18 |
| KRH76596 | Soybean | mitochondrion | 20.17 | 39.67 |
| Os01t0844900-01 | Rice | nucleus | 35.29 | 38.36 |
| PGSC0003DMT400077979 | Potato | nucleus | 50.0 | 37.9 |
| AT3G46640.3 | Thale cress | nucleus | 51.26 | 37.65 |
| Solyc06g076350.2.1 | Tomato | nucleus | 49.16 | 36.34 |
| Os05t0412000-00 | Rice | nucleus | 38.24 | 22.03 |
| Os10t0463400-01 | Rice | nucleus | 19.75 | 13.78 |
| Os03t0224200-01 | Rice | nucleus | 27.31 | 9.41 |
| Os02t0182100-01 | Rice | nucleus | 24.37 | 9.27 |
| Os01t0904700-01 | Rice | nucleus | 21.85 | 8.93 |
| Os02t0796500-01 | Rice | nucleus | 25.63 | 8.87 |
| Os06t0183100-01 | Rice | nucleus | 25.63 | 8.76 |
| Os06t0647200-02 | Rice | nucleus | 19.33 | 6.67 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | EntrezGene:4326391 | EMBL:AY581256 | ProteinID:BAB63676.1 | ProteinID:BAE16279.1 |
| ProteinID:BAF07451.1 | ProteinID:BAS76433.1 | ProteinID:EAZ14991.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0007623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| GO:GO:0009987 | GO:GO:0048511 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants |
| EnsemblPlantsGene:Os01g0971800 | EnsemblPlants:Os01t0971800-00 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 | PANTHER:PTHR31442:SF12 |
| UniProt:Q94DH3 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00000A7F38 | RefSeq:XP_015640779.1 |
| SEG:seg | : | : | : | : | : |
Description
PHYTOCLOCK 1Similar to Two-component response regulator ARR11 (Receiver-like protein 3). (Os01t0971800-00)
Coordinates
chr1:-:42874273..42875515
Molecular Weight (calculated)
25618.7 Da
IEP (calculated)
7.011
GRAVY (calculated)
-0.603
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAPEEYE LGGGEDERVM EWETGLPGAD ELTPLSQPLV PAGLAAAFRI PPEPGRTLLD VHRASAATVS RLRRASSSSS SSFPAFASKG AGTGADEAES
101: GGGADGGNGN TNNSSSKRAR LVWTPQLHKR FVEVVAHLGM KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYVKRMQGLS NEGPSPSDHI FASTPVPHAS
201: LHDQVPSPYH PHPHHHSYNN AAYAATVSSY HHYHHANH
101: GGGADGGNGN TNNSSSKRAR LVWTPQLHKR FVEVVAHLGM KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYVKRMQGLS NEGPSPSDHI FASTPVPHAS
201: LHDQVPSPYH PHPHHHSYNN AAYAATVSSY HHYHHANH
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.