Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G531900.1 | Wheat | nucleus | 96.14 | 97.51 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 95.44 | 94.77 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 90.53 | 94.16 |
| Os01t0971800-00 | Rice | nucleus | 58.25 | 69.75 |
| Zm00001d011785_P001 | Maize | nucleus | 48.42 | 63.01 |
| Zm00001d041960_P001 | Maize | nucleus | 56.14 | 62.02 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 43.16 | 53.71 |
| GSMUA_Achr10P... | Banana | nucleus | 47.72 | 48.75 |
| Solyc06g005680.2.1 | Tomato | nucleus | 45.26 | 48.5 |
| CDX68392 | Canola | nucleus | 43.16 | 46.95 |
| CDY61256 | Canola | nucleus | 44.21 | 45.99 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 50.18 | 45.98 |
| CDX82988 | Canola | nucleus | 41.75 | 45.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.12 | 45.9 |
| PGSC0003DMT400005490 | Potato | nucleus | 47.37 | 44.7 |
| KRH24748 | Soybean | nucleus | 46.67 | 43.46 |
| Bra033809.1-P | Field mustard | nucleus | 43.16 | 43.16 |
| CDX99104 | Canola | nucleus | 43.86 | 43.1 |
| KRH76596 | Soybean | mitochondrion | 18.25 | 42.98 |
| KRH29751 | Soybean | nucleus | 47.37 | 41.8 |
| Bra018204.1-P | Field mustard | nucleus | 44.21 | 41.45 |
| PGSC0003DMT400077979 | Potato | nucleus | 44.56 | 40.45 |
| AT5G59570.2 | Thale cress | nucleus | 42.11 | 40.27 |
| Solyc06g076350.2.1 | Tomato | nucleus | 43.51 | 38.51 |
| AT3G46640.3 | Thale cress | nucleus | 42.46 | 37.35 |
| TraesCS3A01G361800.1 | Wheat | nucleus, plastid | 28.07 | 35.56 |
| TraesCS1A01G258400.1 | Wheat | nucleus | 34.39 | 31.41 |
| TraesCS6A01G146200.3 | Wheat | nucleus | 22.46 | 10.0 |
| TraesCS3A01G391600.1 | Wheat | nucleus | 20.35 | 9.93 |
| TraesCS7A01G146500.1 | Wheat | nucleus | 20.7 | 9.75 |
| TraesCS4A01G063100.1 | Wheat | nucleus | 23.16 | 9.65 |
| TraesCS7A01G146400.1 | Wheat | nucleus | 20.35 | 9.45 |
| TraesCS6A01G359200.1 | Wheat | nucleus | 21.75 | 9.17 |
| TraesCS7A01G146700.1 | Wheat | nucleus | 20.7 | 8.95 |
| TraesCS7A01G510300.1 | Wheat | nucleus | 15.44 | 8.82 |
| TraesCS7A01G511300.1 | Wheat | nucleus | 16.84 | 8.41 |
| TraesCS7A01G502300.1 | Wheat | nucleus | 16.14 | 8.11 |
| TraesCS7A01G511100.1 | Wheat | nucleus | 16.14 | 8.06 |
| TraesCS3A01G473600.1 | Wheat | nucleus | 15.09 | 7.53 |
| TraesCS7A01G539700.1 | Wheat | cytosol, nucleus, plastid | 2.81 | 7.21 |
| TraesCS7A01G510400.1 | Wheat | cytosol | 1.75 | 5.95 |
| TraesCS7A01G539600.1 | Wheat | nucleus | 6.67 | 5.62 |
| TraesCS3A01G473800.1 | Wheat | nucleus | 10.53 | 5.32 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G526600.1 | EnsemblPlantsGene:TraesCS3A01G526600 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| PANTHER:PTHR31442 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| MapMan:27.1.6.3.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:740113130..740113987
Molecular Weight (calculated)
29698.5 Da
IEP (calculated)
8.015
GRAVY (calculated)
-0.540
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAGGYGF DFGGGGGGYG GYDGRVTEWE TGLPGCDELT PLSQPLVPPG LAAAFRIPPE PGRTLLDVHR ASSATVSRLR STSSSPSSGN GHAGTHANGG
101: SFPSFPGKGA AAGDDSGNRD NNSAESAGEK AAATKRARLV WTPQLHKRFV EVVAHLGIKS AVPKTIMQLM NVEGLTRENV ASHLQKYRLY VKRMQGLSNE
201: GPSASDHIFA STPVPPSLRE PQVPHAAAMA PAMYHHHPAP MGGVAAGHGG YYQQQHSGHA VYNGYGGHGH GGGVSSYPHY HHGDQ
101: SFPSFPGKGA AAGDDSGNRD NNSAESAGEK AAATKRARLV WTPQLHKRFV EVVAHLGIKS AVPKTIMQLM NVEGLTRENV ASHLQKYRLY VKRMQGLSNE
201: GPSASDHIFA STPVPPSLRE PQVPHAAAMA PAMYHHHPAP MGGVAAGHGG YYQQQHSGHA VYNGYGGHGH GGGVSSYPHY HHGDQ
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.