Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11244 | Canola | cytosol | 96.65 | 97.19 |
| Bra005738.1-P | Field mustard | cytosol | 96.09 | 96.63 |
| AT5G03230.1 | Thale cress | nucleus | 76.54 | 82.53 |
| CDX70321 | Canola | nucleus | 81.01 | 82.39 |
| CDY10396 | Canola | nucleus | 81.01 | 82.39 |
| CDY65979 | Canola | nucleus | 37.99 | 42.77 |
| GSMUA_Achr11P... | Banana | mitochondrion | 32.96 | 41.26 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 34.64 | 38.27 |
| Os04t0520700-01 | Rice | mitochondrion | 33.52 | 34.48 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 30.73 | 33.54 |
| Os02t0629000-01 | Rice | mitochondrion | 31.84 | 33.53 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 32.96 | 32.96 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 33.52 | 32.61 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 32.4 | 32.04 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 32.4 | 32.04 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 32.4 | 32.04 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 31.84 | 32.02 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 31.84 | 32.02 |
| KXG26730 | Sorghum | mitochondrion | 33.52 | 31.41 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 30.73 | 30.73 |
| Zm00001d025872_P001 | Maize | mitochondrion | 30.73 | 30.56 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 30.17 | 30.51 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 30.17 | 30.51 |
| CDX82889 | Canola | nucleus | 25.7 | 30.26 |
| Zm00001d017287_P001 | Maize | cytosol | 28.49 | 30.0 |
| EER91475 | Sorghum | mitochondrion | 31.84 | 30.0 |
| CDX94069 | Canola | nucleus | 26.26 | 29.94 |
| CDX98721 | Canola | nucleus | 26.26 | 29.94 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 29.05 | 29.55 |
| TraesCS6D01G212800.1 | Wheat | cytosol | 28.49 | 29.48 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 29.05 | 29.21 |
| CDX77180 | Canola | nucleus | 26.82 | 29.09 |
| CDX79115 | Canola | nucleus | 24.58 | 28.76 |
| CDY29096 | Canola | nucleus | 24.02 | 28.67 |
| CDX94568 | Canola | nucleus | 24.02 | 28.67 |
| CDY62461 | Canola | nucleus | 25.14 | 28.48 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 27.37 | 28.32 |
| CDY16655 | Canola | nucleus | 25.7 | 27.54 |
| CDY12918 | Canola | cytosol | 26.82 | 24.24 |
| CDY34631 | Canola | nucleus | 26.26 | 23.38 |
| CDY46674 | Canola | nucleus | 19.55 | 23.33 |
| CDY19509 | Canola | cytosol | 25.7 | 23.23 |
| CDX82885 | Canola | nucleus | 22.35 | 23.12 |
| CDX97979 | Canola | mitochondrion | 26.26 | 23.04 |
| CDX79110 | Canola | nucleus | 21.79 | 22.54 |
| CDY49797 | Canola | mitochondrion | 25.7 | 22.44 |
| CDX92790 | Canola | nucleus | 18.44 | 22.15 |
| CDX97628 | Canola | nucleus | 25.14 | 20.83 |
| CDY68595 | Canola | nucleus | 24.58 | 20.37 |
| CDY32323 | Canola | nucleus | 22.91 | 19.81 |
| CDX82452 | Canola | nucleus | 24.02 | 19.11 |
| CDY20098 | Canola | nucleus | 21.23 | 18.45 |
| CDX75803 | Canola | nucleus | 23.46 | 17.8 |
| Os10t0481000-00 | Rice | mitochondrion | 22.35 | 13.38 |
Protein Annotations
| EnsemblPlants:CDX80857 | EnsemblPlantsGene:GSBRNA2T00134254001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 | PFAM:PF04520 |
| ProteinID:CDX80857 | ProteinID:CDX80857.1 | SEG:seg | UniParc:UPI0004EE4FE4 | MapMan:35.2 | : |
Description
BnaC03g01110D
Coordinates
chrLK031823:+:509644..510459
Molecular Weight (calculated)
20136.4 Da
IEP (calculated)
5.963
GRAVY (calculated)
-0.879
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKHFFGK PNYIYPQPEP EMSENDENVF EFDESDIHNL GDHRLPSSFE AKRSISISRL RRKPAKVGDS SVSVNRKAPK TGSLPVNIPD WSKILKSEYR
101: SHVVVPDDDT DEDDEDEEDT NGGDTAAAAG GRRIIPPHEY LARRRGSSFT MHEGIGGTAK GRDLKILRNV IWEKIGFLD
101: SHVVVPDDDT DEDDEDEEDT NGGDTAAAAG GRRIIPPHEY LARRRGSSFT MHEGIGGTAK GRDLKILRNV IWEKIGFLD
001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
Arabidopsis Description
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.