Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46674 | Canola | nucleus | 97.99 | 97.33 |
| Bra019080.1-P | Field mustard | nucleus | 95.97 | 94.7 |
| AT4G26950.1 | Thale cress | nucleus | 71.81 | 74.31 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 33.56 | 37.04 |
| KRH33098 | Soybean | cytosol | 32.21 | 36.92 |
| KRH14391 | Soybean | nucleus | 44.3 | 34.74 |
| CDX94069 | Canola | nucleus | 36.24 | 34.39 |
| CDX98721 | Canola | nucleus | 36.24 | 34.39 |
| CDX82889 | Canola | nucleus | 34.23 | 33.55 |
| KRH73758 | Soybean | nucleus | 43.62 | 33.33 |
| CDX94568 | Canola | nucleus | 33.56 | 33.33 |
| CDY29096 | Canola | nucleus | 33.56 | 33.33 |
| CDX79115 | Canola | nucleus | 32.21 | 31.37 |
| CDY16655 | Canola | nucleus | 34.23 | 30.54 |
| KRH46190 | Soybean | cytosol | 42.95 | 30.19 |
| VIT_19s0090g00510.t01 | Wine grape | plastid | 42.28 | 27.16 |
| KRG98750 | Soybean | nucleus | 36.24 | 25.96 |
| CDY62461 | Canola | nucleus | 24.83 | 23.42 |
| CDY65979 | Canola | nucleus | 24.83 | 23.27 |
| CDX79110 | Canola | nucleus | 26.85 | 23.12 |
| CDX77180 | Canola | nucleus | 24.83 | 22.42 |
| CDX82885 | Canola | nucleus | 25.5 | 21.97 |
| CDY12918 | Canola | cytosol | 27.52 | 20.71 |
| CDY19509 | Canola | cytosol | 27.52 | 20.71 |
| CDX97979 | Canola | mitochondrion | 28.19 | 20.59 |
| CDY49797 | Canola | mitochondrion | 28.19 | 20.49 |
| CDY34631 | Canola | nucleus | 26.85 | 19.9 |
| CDX70321 | Canola | nucleus | 22.15 | 18.75 |
| CDY10396 | Canola | nucleus | 22.15 | 18.75 |
| CDY11244 | Canola | cytosol | 22.15 | 18.54 |
| CDX80857 | Canola | cytosol | 22.15 | 18.44 |
| CDY32323 | Canola | nucleus | 25.5 | 18.36 |
| CDX97628 | Canola | nucleus | 26.17 | 18.06 |
| CDY68595 | Canola | nucleus | 25.5 | 17.59 |
| CDY20098 | Canola | nucleus | 24.16 | 17.48 |
| CDX82452 | Canola | nucleus | 24.83 | 16.44 |
| CDX75803 | Canola | nucleus | 24.83 | 15.68 |
Protein Annotations
| EnsemblPlants:CDX92790 | EnsemblPlantsGene:GSBRNA2T00154615001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 | PFAM:PF04520 |
| ProteinID:CDX92790 | ProteinID:CDX92790.1 | SEG:seg | UniParc:UPI0004EE9208 | MapMan:35.2 | : |
Description
BnaC07g40480D
Coordinates
chrLK031873:+:834061..834510
Molecular Weight (calculated)
17206.3 Da
IEP (calculated)
8.858
GRAVY (calculated)
-0.987
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNIKRYDV WRSLKDGDYQ EEDVWDVLDG YHQPSLMISN HTSKPSLLAQ TFLSSEPKMI PERQRREGMA HMGQHSAPVN VPEWSIVHRK KTKKAEDDDD
101: ENVSPEEYFL QRSRSSSSSS VMEGIGRKLK GRDLSKVRNA VLKKTGFLE
101: ENVSPEEYFL QRSRSSSSSS VMEGIGRKLK GRDLSKVRNA VLKKTGFLE
001: MEKSYMKHEL WGDGDFQEDD VWDVLDGYQS PFMISSNHTT KPSFSTQTLL PSEPRMIPER QRTEGMAPMR QQSVPVNVPD WSMVQRKKTK KVVDDENVSP
101: EEYFLRRSRS SSSSSVMEGV GRKLKGRDLS KVRNAILKQT GFLE
101: EEYFLRRSRS SSSSSVMEGV GRKLKGRDLS KVRNAILKQT GFLE
Arabidopsis Description
At4g26950 [Source:UniProtKB/TrEMBL;Acc:Q9SZ34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.