Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46674 | Canola | nucleus | 76.39 | 73.33 |
| Bra019080.1-P | Field mustard | nucleus | 76.39 | 72.85 |
| CDX92790 | Canola | nucleus | 74.31 | 71.81 |
| KRH33098 | Soybean | cytosol | 33.33 | 36.92 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 33.33 | 35.56 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 40.28 | 34.52 |
| KRH14391 | Soybean | nucleus | 44.44 | 33.68 |
| AT4G21970.1 | Thale cress | nucleus | 35.42 | 32.48 |
| KRH73758 | Soybean | nucleus | 43.75 | 32.31 |
| KRH46190 | Soybean | cytosol | 44.44 | 30.19 |
| VIT_19s0090g00510.t01 | Wine grape | plastid | 43.75 | 27.16 |
| KRG98750 | Soybean | nucleus | 37.5 | 25.96 |
| AT3G45210.1 | Thale cress | nucleus | 25.69 | 25.0 |
| AT2G28400.1 | Thale cress | mitochondrion | 27.78 | 24.69 |
| AT5G60680.1 | Thale cress | nucleus | 27.78 | 24.54 |
| AT1G11700.1 | Thale cress | nucleus | 29.86 | 21.39 |
| AT4G21930.1 | Thale cress | cytosol | 27.08 | 21.31 |
| AT5G03230.1 | Thale cress | nucleus | 24.31 | 21.08 |
| AT1G61930.1 | Thale cress | cytosol | 28.47 | 20.2 |
| AT3G15040.1 | Thale cress | nucleus | 27.78 | 16.46 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828802 | UniProt:A0A178V0M8 | ProteinID:AEE85274.1 | ProteinID:AEE85275.1 | ArrayExpress:AT4G26950 |
| EnsemblPlantsGene:AT4G26950 | RefSeq:AT4G26950 | TAIR:AT4G26950 | RefSeq:AT4G26950-TAIR-G | EnsemblPlants:AT4G26950.1 | TAIR:AT4G26950.1 |
| EMBL:BT012112 | EMBL:BT012374 | ProteinID:CAB36541.1 | ProteinID:CAB79550.1 | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0008150 | GO:GO:0009506 | RefSeq:NP_001190851.1 | RefSeq:NP_194425.1 | ProteinID:OAO99240.1 | PFAM:PF04520 |
| PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009047 | PANTHER:PTHR33083 |
| PANTHER:PTHR33083:SF4 | UniProt:Q9SZ34 | InterPro:Senescence_reg_S40 | UniParc:UPI00000A3517 | SEG:seg | : |
Description
At4g26950 [Source:UniProtKB/TrEMBL;Acc:Q9SZ34]
Coordinates
chr4:-:13533391..13534498
Molecular Weight (calculated)
16602.7 Da
IEP (calculated)
8.920
GRAVY (calculated)
-0.881
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSYMKHEL WGDGDFQEDD VWDVLDGYQS PFMISSNHTT KPSFSTQTLL PSEPRMIPER QRTEGMAPMR QQSVPVNVPD WSMVQRKKTK KVVDDENVSP
101: EEYFLRRSRS SSSSSVMEGV GRKLKGRDLS KVRNAILKQT GFLE
101: EEYFLRRSRS SSSSSVMEGV GRKLKGRDLS KVRNAILKQT GFLE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.