Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98721 | Canola | nucleus | 84.71 | 84.71 |
| Bra019408.1-P | Field mustard | nucleus | 84.71 | 84.71 |
| CDX94069 | Canola | nucleus | 83.44 | 83.44 |
| CDX79115 | Canola | nucleus | 80.89 | 83.01 |
| Bra013577.1-P | Field mustard | nucleus | 80.89 | 83.01 |
| CDX82889 | Canola | nucleus | 79.62 | 82.24 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 61.15 | 57.14 |
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 33.12 | 52.53 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 41.4 | 48.15 |
| KRH20851 | Soybean | nucleus | 49.04 | 47.24 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 47.77 | 39.47 |
| KRH51093 | Soybean | nucleus | 47.13 | 39.15 |
| KRH02067 | Soybean | nucleus | 45.86 | 38.92 |
| PGSC0003DMT400042495 | Potato | nucleus | 36.94 | 37.91 |
| Solyc02g080580.1.1 | Tomato | nucleus | 36.31 | 36.77 |
| AT4G26950.1 | Thale cress | nucleus | 32.48 | 35.42 |
| AT3G45210.1 | Thale cress | nucleus | 28.03 | 29.73 |
| AT5G60680.1 | Thale cress | nucleus | 28.66 | 27.61 |
| AT2G28400.1 | Thale cress | mitochondrion | 27.39 | 26.54 |
| AT5G03230.1 | Thale cress | nucleus | 28.03 | 26.51 |
| AT4G21930.1 | Thale cress | cytosol | 26.75 | 22.95 |
| AT1G11700.1 | Thale cress | nucleus | 28.66 | 22.39 |
| AT1G61930.1 | Thale cress | cytosol | 26.75 | 20.69 |
| AT3G15040.1 | Thale cress | nucleus | 29.3 | 18.93 |
Protein Annotations
| ArrayExpress:AT4G21970 | EnsemblPlants:AT4G21970.1 | EnsemblPlantsGene:AT4G21970 | EntrezGene:828286 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 |
| PANTHER:PTHR33083:SF4 | PFAM:PF04520 | PO:PO:0000293 | ProteinID:AEE84536.1 | ProteinID:OAO99046.1 | RefSeq:AT4G21970 |
| RefSeq:AT4G21970-TAIR-G | RefSeq:NP_193928.2 | SEG:seg | TAIR:AT4G21970 | TAIR:AT4G21970.1 | UniParc:UPI0001739404 |
| UniProt:A0A178UYC2 | UniProt:F4JKD1 | MapMan:35.2 | : | : | : |
Description
Protein of unknown function, DUF584 [Source:TAIR;Acc:AT4G21970]
Coordinates
chr4:+:11653234..11654462
Molecular Weight (calculated)
17168.9 Da
IEP (calculated)
6.269
GRAVY (calculated)
-0.743
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGEEFQEE EVWSVLRESE TQGPEMKMSK SNNLFSASSS SSARYIPKGN EVSGGAKQSS APMNIPDWSK VYGYSKKNTS SHLHSWAIDD DDEGSMVPPH
101: ELVAKRLART QISSFSMCEG IGRTLKGRDL SKTRNAVLTR TGFLESNITS SSTTSPP
101: ELVAKRLART QISSFSMCEG IGRTLKGRDL SKTRNAVLTR TGFLESNITS SSTTSPP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.