Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82885 | Canola | nucleus | 63.39 | 67.05 |
| CDX79110 | Canola | nucleus | 62.84 | 66.47 |
| Bra013574.1-P | Field mustard | cytosol | 62.84 | 66.47 |
| VIT_10s0116g01810.t01 | Wine grape | mitochondrion, nucleus | 48.09 | 45.6 |
| GSMUA_Achr7P00240_001 | Banana | extracellular | 21.31 | 45.35 |
| KRH20860 | Soybean | mitochondrion | 46.99 | 44.1 |
| KRH11426 | Soybean | mitochondrion | 46.45 | 44.04 |
| AT1G61930.1 | Thale cress | cytosol | 48.09 | 43.35 |
| AT1G11700.1 | Thale cress | nucleus | 46.99 | 42.79 |
| VIT_10s0116g01820.t01 | Wine grape | mitochondrion, nucleus | 49.18 | 42.25 |
| PGSC0003DMT400032972 | Potato | mitochondrion | 44.81 | 41.21 |
| PGSC0003DMT400042431 | Potato | mitochondrion, nucleus | 46.45 | 41.06 |
| Solyc02g080510.1.1 | Tomato | mitochondrion | 45.9 | 40.78 |
| KRH02073 | Soybean | nucleus | 46.45 | 39.91 |
| Solyc02g032800.1.1 | Tomato | nucleus | 46.45 | 39.53 |
| TraesCS2D01G266500.1 | Wheat | mitochondrion, nucleus | 38.25 | 39.33 |
| HORVU2Hr1G064730.1 | Barley | cytosol | 37.16 | 38.64 |
| KRH51082 | Soybean | nucleus | 48.63 | 38.53 |
| TraesCS2A01G256200.1 | Wheat | mitochondrion, nucleus | 38.25 | 38.46 |
| TraesCS2B01G286300.1 | Wheat | mitochondrion, nucleus | 37.7 | 38.33 |
| EER97815 | Sorghum | mitochondrion | 33.88 | 36.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.52 | 35.71 |
| GSMUA_Achr4P33500_001 | Banana | nucleus | 34.43 | 34.43 |
| TraesCS2B01G247900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 31.15 | 33.73 |
| TraesCS2A01G222500.1 | Wheat | cytosol | 31.15 | 33.73 |
| TraesCS2D01G228500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 30.6 | 33.14 |
| AT5G60680.1 | Thale cress | nucleus | 28.96 | 32.52 |
| AT3G45210.1 | Thale cress | nucleus | 26.23 | 32.43 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 27.87 | 30.36 |
| Os07t0516300-01 | Rice | mitochondrion | 32.24 | 30.1 |
| Zm00001d021627_P001 | Maize | mitochondrion | 30.6 | 29.79 |
| Zm00001d006489_P001 | Maize | mitochondrion | 31.15 | 29.69 |
| EER99449 | Sorghum | mitochondrion | 30.6 | 28.87 |
| AT2G28400.1 | Thale cress | mitochondrion | 24.59 | 27.78 |
| AT5G03230.1 | Thale cress | nucleus | 25.14 | 27.71 |
| AT4G26950.1 | Thale cress | nucleus | 21.31 | 27.08 |
| GSMUA_Achr6P00350_001 | Banana | cytosol, nucleus, plastid | 25.14 | 26.9 |
| AT4G21970.1 | Thale cress | nucleus | 22.95 | 26.75 |
| HORVU2Hr1G046550.2 | Barley | plastid | 25.14 | 22.22 |
| AT3G15040.1 | Thale cress | nucleus | 27.32 | 20.58 |
Protein Annotations
| ArrayExpress:AT4G21930 | EMBL:AY120720 | EMBL:BT000027 | EnsemblPlants:AT4G21930.1 | EnsemblPlantsGene:AT4G21930 | EntrezGene:828282 |
| InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF11 | PFAM:PF04520 | PO:PO:0000293 | ProteinID:AEE84531.1 |
| RefSeq:AT4G21930 | RefSeq:AT4G21930-TAIR-G | RefSeq:NP_193924.2 | SEG:seg | TAIR:AT4G21930 | TAIR:AT4G21930.1 |
| Unigene:At.75611 | UniParc:UPI00000AC57A | UniProt:Q8L864 | MapMan:35.2 | : | : |
Description
Uncharacterized protein At4g21930 [Source:UniProtKB/TrEMBL;Acc:Q8L864]
Coordinates
chr4:+:11639757..11640583
Molecular Weight (calculated)
20379.5 Da
IEP (calculated)
5.955
GRAVY (calculated)
-0.850
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRSLPIS RSERFLGSHQ QSDDHHVDGE TTFELELMEE DVWSVVEPDE PKELGAWNAR SLEASGSEWR RKGGRVSDLT VPSDGQRKRH VATSAPVKVP
101: DWSKILKVES VKSMHNNNND NDNADVADCD WESAMVPPHE YVAARSRNGD GGSSVFLGVG RTLKGRDMRR VRDAVWSQTG FYG
101: DWSKILKVES VKSMHNNNND NDNADVADCD WESAMVPPHE YVAARSRNGD GGSSVFLGVG RTLKGRDMRR VRDAVWSQTG FYG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.