Factsheet for PGSC0003DMT400032972

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g032800.1.1	Tomato	nucleus	92.46	85.58
VIT_10s0116g01810.t01	Wine grape	mitochondrion, nucleus	61.31	63.21
PGSC0003DMT400042431	Potato	mitochondrion, nucleus	65.33	62.8
VIT_10s0116g01820.t01	Wine grape	mitochondrion, nucleus	62.81	58.69
KRH20860	Soybean	mitochondrion	52.76	53.85
KRH11426	Soybean	mitochondrion	51.76	53.37
AT1G11700.1	Thale cress	nucleus	50.25	49.75
CDX97979	Canola	mitochondrion	49.25	48.04
Bra019837.1-P	Field mustard	mitochondrion	49.25	47.8
CDY49797	Canola	mitochondrion	48.74	47.32
CDY34631	Canola	nucleus	47.74	47.26
KRH02073	Soybean	nucleus	50.25	46.95
AT1G61930.1	Thale cress	cytosol	47.74	46.8
CDX82885	Canola	nucleus	39.7	45.66
CDX79110	Canola	nucleus	39.7	45.66
Bra013574.1-P	Field mustard	cytosol	39.7	45.66
AT4G21930.1	Thale cress	cytosol	41.21	44.81
KRH51082	Soybean	nucleus	51.76	44.59
CDY12918	Canola	cytosol	44.22	44.44
Bra027071.1-P	Field mustard	cytosol	44.22	44.44
GSMUA_Achr7P00240_001	Banana	extracellular	19.1	44.19
CDY19509	Canola	cytosol	43.22	43.43
HORVU2Hr1G064730.1	Barley	cytosol	34.17	38.64
TraesCS2D01G266500.1	Wheat	mitochondrion, nucleus	34.17	38.2
EER97815	Sorghum	mitochondrion	32.16	38.1
TraesCS2A01G256200.1	Wheat	mitochondrion, nucleus	34.67	37.91
GSMUA_AchrUn_...	Banana	nucleus	34.17	37.36
TraesCS2B01G286300.1	Wheat	mitochondrion, nucleus	33.67	37.22
TraesCS2B01G247900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.16	36.69
GSMUA_Achr4P33500_001	Banana	nucleus	33.67	36.61
PGSC0003DMT400045373	Potato	cytosol	26.63	36.05
TraesCS2A01G222500.1	Wheat	cytosol	30.15	35.5
TraesCS2D01G228500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.15	35.5
PGSC0003DMT400020798	Potato	plastid	30.15	35.29
PGSC0003DMT400062500	Potato	nucleus	28.64	33.33
Zm00001d006489_P001	Maize	mitochondrion	32.16	33.33
Zm00001d021627_P001	Maize	mitochondrion	31.16	32.98
EER99449	Sorghum	mitochondrion	31.16	31.96
PGSC0003DMT400055482	Potato	cytosol	25.63	31.88
Os07t0516300-01	Rice	mitochondrion	30.15	30.61
PGSC0003DMT400090902	Potato	cytosol, plastid	30.15	28.99
PGSC0003DMT400042495	Potato	nucleus	22.11	28.76
GSMUA_Achr6P00350_001	Banana	cytosol, nucleus, plastid	24.12	28.07
PGSC0003DMT400057474	Potato	nucleus	26.63	27.32
PGSC0003DMT400015061	Potato	cytosol, mitochondrion, nucleus, plastid	27.64	24.77
PGSC0003DMT400072600	Potato	nucleus	28.14	23.24
HORVU2Hr1G046550.2	Barley	plastid	24.12	23.19
PGSC0003DMT400023089	Potato	cytosol	27.64	22.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400032972	EnsemblPlantsGene:PGSC0003DMG400012665	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF11	PFAM:PF04520
PGSC:PGSC0003DMG400012665	SEG:seg	UniParc:UPI0002966B87	UniProt:M1AYE3	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012665]

Coordinates

chr2:+:16846315..16847115

Molecular Weight (calculated)

21676.5 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.724

Length

199 amino acids

Sequence
(BLAST)

001: MAKGRKLTIS MSERYLGSYS YNHANQTVNE TSEFGEDDVW STVDDIVVNG GDDDHLMNGA FDSRATAESD VGSFRSSRQH QAGGGGGLSL AFDDDAGKAT
101: SSSRIIHQFR GQDSLAAQSP RGHHMASSAP VNVPDWSKIY RVDSVESFHD SDDGVDDHEL DMVPPHEYLA RGYGVGRTLK GRDMSRVRDA VWSQTGFDG

Best Arabidopsis Sequence Match ( AT1G11700.1 )
(BLAST)

001: MARGRKLTMS QSERYLGSSY SYGDSNGNSA TDESELTEED IWSHAVDHSP EMLESHGAWN TRDAVVRNGR VGGGLSLAFE DASSSPRIVH QIRGGGEGGG
101: GGGGGGRVER QLASSAPVNV PDWSKIYRVN SVESIHESDE EEEEDSGMMM PPHEYLAKSQ QRRSRKSGGG GSVFEGVGRT LKGRELRRVR DAIWSQTGFY
201: G

Arabidopsis Description

At1g11700 [Source:UniProtKB/TrEMBL;Acc:Q9SAA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.