Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12918 | Canola | cytosol | 80.3 | 82.32 |
| Bra027071.1-P | Field mustard | cytosol | 79.31 | 81.31 |
| CDY19509 | Canola | cytosol | 78.82 | 80.81 |
| AT1G11700.1 | Thale cress | nucleus | 70.94 | 71.64 |
| AT4G21930.1 | Thale cress | cytosol | 43.35 | 48.09 |
| PGSC0003DMT400032972 | Potato | mitochondrion | 46.8 | 47.74 |
| PGSC0003DMT400042431 | Potato | mitochondrion, nucleus | 47.78 | 46.86 |
| Solyc02g080510.1.1 | Tomato | mitochondrion | 47.29 | 46.6 |
| Solyc02g032800.1.1 | Tomato | nucleus | 49.26 | 46.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.44 | 41.76 |
| GSMUA_Achr4P33500_001 | Banana | nucleus | 36.45 | 40.44 |
| HORVU2Hr1G064730.1 | Barley | cytosol | 34.98 | 40.34 |
| GSMUA_Achr7P00240_001 | Banana | extracellular | 16.75 | 39.53 |
| TraesCS2D01G266500.1 | Wheat | mitochondrion, nucleus | 34.48 | 39.33 |
| TraesCS2A01G256200.1 | Wheat | mitochondrion, nucleus | 34.98 | 39.01 |
| TraesCS2B01G286300.1 | Wheat | mitochondrion, nucleus | 34.48 | 38.89 |
| EER97815 | Sorghum | mitochondrion | 30.05 | 36.31 |
| TraesCS2B01G247900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.06 | 34.91 |
| AT5G60680.1 | Thale cress | nucleus | 27.59 | 34.36 |
| TraesCS2A01G222500.1 | Wheat | cytosol | 28.57 | 34.32 |
| TraesCS2D01G228500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 28.08 | 33.73 |
| AT3G45210.1 | Thale cress | nucleus | 24.14 | 33.11 |
| AT5G03230.1 | Thale cress | nucleus | 25.62 | 31.33 |
| Zm00001d006489_P001 | Maize | mitochondrion | 28.57 | 30.21 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 24.63 | 29.76 |
| Os07t0516300-01 | Rice | mitochondrion | 28.08 | 29.08 |
| AT2G28400.1 | Thale cress | mitochondrion | 23.15 | 29.01 |
| Zm00001d021627_P001 | Maize | mitochondrion | 26.6 | 28.72 |
| AT4G26950.1 | Thale cress | nucleus | 20.2 | 28.47 |
| EER99449 | Sorghum | mitochondrion | 26.6 | 27.84 |
| AT4G21970.1 | Thale cress | nucleus | 20.69 | 26.75 |
| GSMUA_Achr6P00350_001 | Banana | cytosol, nucleus, plastid | 21.67 | 25.73 |
| HORVU2Hr1G046550.2 | Barley | plastid | 22.17 | 21.74 |
| AT3G15040.1 | Thale cress | nucleus | 25.62 | 21.4 |
Protein Annotations
| MapMan:35.2 | EntrezGene:842488 | ProteinID:AAC28509.1 | ProteinID:AEE33904.1 | EMBL:AK230226 | ArrayExpress:AT1G61930 |
| EnsemblPlantsGene:AT1G61930 | RefSeq:AT1G61930 | TAIR:AT1G61930 | RefSeq:AT1G61930-TAIR-G | EnsemblPlants:AT1G61930.1 | TAIR:AT1G61930.1 |
| Unigene:At.36352 | EMBL:BT028990 | GO:GO:0005575 | RefSeq:NP_564788.1 | UniProt:O80698 | PFAM:PF04520 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF11 |
| InterPro:Senescence_reg_S40 | UniParc:UPI000009D67A | SEG:seg | : | : | : |
Description
At1g61930 [Source:UniProtKB/TrEMBL;Acc:O80698]
Coordinates
chr1:+:22893101..22894064
Molecular Weight (calculated)
22250.6 Da
IEP (calculated)
4.791
GRAVY (calculated)
-0.812
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKGRKPTTM NRSDRYLGSY TYGDSHGNSV TDELELGEED IWSPAVIHDD TTENEESYGT WNLRATLGKN GRVGGLSLAF EGSLVAPPSS SPMIVQKIHG
101: GGGEGEEDRR KLASSAPVNV PDWSKIYRVD SVESIHELDD EDDEDEESGM MPPHEYLAKS QARRSRKIGG GGASVFDGVG RTLKGRELRR VRDAIWSQTG
201: FYG
101: GGGEGEEDRR KLASSAPVNV PDWSKIYRVD SVESIHELDD EDDEDEESGM MPPHEYLAKS QARRSRKIGG GGASVFDGVG RTLKGRELRR VRDAIWSQTG
201: FYG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.