Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0080g00750.t01 | Wine grape | cytosol | 19.72 | 86.0 |
| GSMUA_Achr6P06990_001 | Banana | mitochondrion, nucleus | 32.11 | 41.42 |
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 18.35 | 40.4 |
| EER94255 | Sorghum | mitochondrion, nucleus | 37.16 | 33.61 |
| VIT_16s0098g01240.t01 | Wine grape | nucleus | 31.65 | 33.5 |
| Zm00001d003775_P001 | Maize | cytosol, mitochondrion, nucleus | 37.16 | 32.66 |
| TraesCS2B01G312200.1 | Wheat | nucleus | 35.32 | 32.63 |
| TraesCS2D01G293600.1 | Wheat | nucleus | 35.32 | 32.08 |
| TraesCS2A01G295700.1 | Wheat | nucleus | 34.4 | 31.78 |
| OQU81531 | Sorghum | nucleus | 36.7 | 31.75 |
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 24.31 | 31.74 |
| VIT_08s0040g01860.t01 | Wine grape | cytosol | 23.85 | 31.71 |
| Zm00001d032976_P001 | Maize | mitochondrion, nucleus | 36.24 | 31.23 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 27.06 | 31.05 |
| Os04t0413900-01 | Rice | nucleus | 34.86 | 31.02 |
| VIT_10s0116g01810.t01 | Wine grape | mitochondrion, nucleus | 25.69 | 29.02 |
| VIT_10s0116g01820.t01 | Wine grape | mitochondrion, nucleus | 26.61 | 27.23 |
| VIT_19s0090g00510.t01 | Wine grape | plastid | 24.77 | 23.28 |
Protein Annotations
| ArrayExpress:VIT_08s0007g02950 | EMBL:AM469974 | EMBL:FN595991 | EnsemblPlants:VIT_08s0007g02950.t01 | EnsemblPlantsGene:VIT_08s0007g02950 | EntrezGene:104880155 |
| InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF16 | PFAM:PF04520 | ProteinID:CAN79276 | ProteinID:CAN79276.1 |
| ProteinID:CBI30330 | ProteinID:CBI30330.3 | RefSeq:XP_010654113.1 | SEG:seg | unigene:Vvi.17656 | UniParc:UPI00015C9DB9 |
| UniProt:D7TJA4 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:17031030..17031948
Molecular Weight (calculated)
23922.8 Da
IEP (calculated)
8.034
GRAVY (calculated)
-0.766
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: METKRFSNSS HRRSTTARLL GVPSGQSGPS TGDSSFSGGD FSEDDVFWTS DLVEPNHLPN NPFGAGKSND HFRTPESHGI LATLTDSDQN MTIEAPPMLN
101: RKTSFPSSIR AVPAIPKPPH ISLENKHSQS LPIRRFHQSA PMNIPVLSKA RSSSLAQADD EDDEAEDEML PPHEIVARGS RRSPKTTSSV LEGVGRTLKG
201: RDLRQVRNAV WRKTGFLD
101: RKTSFPSSIR AVPAIPKPPH ISLENKHSQS LPIRRFHQSA PMNIPVLSKA RSSSLAQADD EDDEAEDEML PPHEIVARGS RRSPKTTSSV LEGVGRTLKG
201: RDLRQVRNAV WRKTGFLD
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.