Factsheet for HORVU6Hr1G003770.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G003770.1	mitochondrion, mitochondrion, mitochondrion
HORVU7Hr1G001330.9	mitochondrion, mitochondrion, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54220.1	HORVU6Hr1G003770.1	AT1G54220.1	24846799
AT1G54220.1	HORVU7Hr1G001330.9	AT1G54220.1	24846799
AT1G54220.1	HORVU6Hr1G003770.1	AT3G13930.1	24846799
AT1G54220.1	HORVU7Hr1G001330.9	AT3G13930.1	24846799
AT3G13930.1	HORVU6Hr1G003770.1	AT3G13930.1	24846799
AT3G13930.1	HORVU7Hr1G001330.9	AT3G13930.1	24846799

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G028600.1	Wheat	mitochondrion	95.32	95.68
TraesCS6A01G022600.2	Wheat	golgi	96.07	95.35
TraesCS6D01G024400.1	Wheat	golgi, mitochondrion	95.13	93.73
Os07t0410100-01	Rice	mitochondrion	84.46	83.36
EES04754	Sorghum	mitochondrion	83.71	82.93
Os02t0105200-01	Rice	mitochondrion	83.71	81.57
Zm00001d053580_P002	Maize	mitochondrion	82.58	80.04
Zm00001d016365_P002	Maize	mitochondrion	81.84	70.83
HORVU7Hr1G001330.9	Barley	plastid	74.72	69.15
KRH47526	Soybean	mitochondrion	64.98	63.44
AT3G13930.1	Thale cress	mitochondrion	63.86	63.27
Solyc07g006790.2.1	Tomato	plastid	65.36	63.11
KRH06095	Soybean	mitochondrion	64.42	62.89
PGSC0003DMT400048225	Potato	mitochondrion	64.98	62.86
Bra001531.1-P	Field mustard	mitochondrion, plastid	54.31	62.23
VIT_11s0016g01870.t01	Wine grape	mitochondrion	63.67	62.16
VIT_09s0002g01800.t01	Wine grape	mitochondrion	64.23	61.8
AT1G54220.1	Thale cress	mitochondrion	62.36	61.78
Bra037976.1-P	Field mustard	mitochondrion	62.55	61.74
CDX82504	Canola	plastid	61.98	61.52
Bra027386.1-P	Field mustard	mitochondrion	57.3	61.2
CDY55206	Canola	mitochondrion	57.87	60.35
CDX97529	Canola	mitochondrion	63.11	59.96
CDY24058	Canola	mitochondrion	62.17	59.82
CDX75740	Canola	mitochondrion, plastid	62.73	59.71
CDY33075	Canola	mitochondrion, plastid	61.98	59.64
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	66.67	56.06
HORVU7Hr1G072650.1	Barley	mitochondrion	36.33	37.02
HORVU5Hr1G061140.1	Barley	plastid	24.72	28.51
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	22.28	25.0
HORVU5Hr1G112850.3	Barley	plastid	24.91	24.81
HORVU2Hr1G012440.1	Barley	cytosol	20.04	24.26
HORVU5Hr1G038090.3	Barley	plastid	16.85	20.88

Protein Annotations

KEGG:00010+2.3.1.12	KEGG:00020+2.3.1.12	KEGG:00620+2.3.1.12	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004742	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006090	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045254	EnsemblPlantsGene:HORVU6Hr1G003770	EnsemblPlants:HORVU6Hr1G003770.1
InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	InterPro:LAT1	UniProt:M0VJ84
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826
InterPro:PSBD	PANTHER:PTHR43178	PANTHER:PTHR43178:SF4	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777
InterPro:Single_hybrid_motif	TIGRFAMs:TIGR01349	UniParc:UPI00029629A8	SEG:seg	:	:

Description

Acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:M0VJ84]

Coordinates

chrchr6H:-:8213254..8219841

Molecular Weight (calculated)

57302.9 Da

IEP (calculated)

7.848

GRAVY (calculated)

-0.415

Length

534 amino acids

Sequence
(BLAST)

001: MQLRSLRNAV DFERSSLARY FSTGSGSSAI KENGVEKRIG GARFSQYKQP GKELETFKVS LGVNGSSASR RTLINRAPSA GTSLNGSLSC GRVASARSFS
101: SSADLPPHQE IGMPSLSPTM TEGNIAKWLK KEGDKVSPGE VLCEVETDKA TVEMESMEEG YLAKIVQGDG AKEIKVGEVI CVTVEEEGDI EKFKDYKPSA
201: ADAPAAPSES KATPEPAEPK VEEKVPAKAS EPKAPKAEES SRSGDRIFAS PLARKLAEDN NVQLSSVKGT GPDGRILKAD IEDYLASGAK GGKSESFAAS
301: GLDYTDIPNA QIRKVTANRL LASKQTIPHY YLTVDTRVDK LIKLRGELNP LQEASGGKKI SINDLVIKAA ALALRKVPQC NSSWMNDFIR QYNNVNINVA
401: VQTEHGLFVP VVRDADKKGL GTIGEEVKQL AQRARDNSLK PQDYEGGTFT VSNLGGPFGI KQFSAIINPP QSAILAIGSA EKRVIPGSAD GQYEFGSYMS
501: VTMSCDHRVI DGAIGAEFLK AFKGYIENPT TMLL

Best Arabidopsis Sequence Match ( AT1G54220.2 )
(BLAST)

001: MAYASRIINH SKKLKDVSTL LRRENAATIR YYSNTNRAPL NREDTFNSRL GYPPLERISI CSTSTLPVSI IFSTTRSNLS SAMGRPIFGK EFSCLMQSAR
101: GFSSGSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGYLAKIVK AEGSKEIQVG EVIAITVEDE EDIGKFKDYT
201: PSSTADAAPT KAEPTPAPPK EEKVKQPSSP PEPKASKPST PPTGDRVFAS PLARKLAEDN NVPLSDIEGT GPEGRIVKAD IDEYLASSGK GATAKPSKST
301: DSKAPALDYV DIPHSQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKLMALR SQLNSFKEAS GGKRISVNDL VVKAAALALR KVPQCNSSWT DDYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DRKGLSTIGE EVRLLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VVNPPQAAIL AVGSAEKRVV PGNGPDQFNF
501: ASYMPVTLSC DHRVVDGAIG AEWLKAFKGY IENPKSMLL

Arabidopsis Description

Acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.