Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G072570.5 | Barley | plastid | 15.58 | 4.27 |
| HORVU5Hr1G037920.1 | Barley | cytosol | 24.68 | 4.2 |
| HORVU4Hr1G044060.1 | Barley | cytosol | 22.08 | 4.19 |
| HORVU6Hr1G038010.6 | Barley | cytosol | 24.68 | 4.14 |
| HORVU1Hr1G066760.1 | Barley | plastid | 23.38 | 4.11 |
| HORVU5Hr1G077800.1 | Barley | cytosol | 22.08 | 3.51 |
| HORVU5Hr1G077760.1 | Barley | cytosol | 22.08 | 3.45 |
| HORVU1Hr1G074110.1 | Barley | cytosol | 16.88 | 3.34 |
| HORVU6Hr1G038710.1 | Barley | cytosol | 22.08 | 3.28 |
| HORVU2Hr1G032540.2 | Barley | plastid | 31.17 | 3.27 |
| HORVU7Hr1G085870.2 | Barley | nucleus | 20.78 | 3.08 |
| HORVU5Hr1G017550.9 | Barley | nucleus | 20.78 | 2.61 |
| HORVU2Hr1G072600.1 | Barley | endoplasmic reticulum | 7.79 | 2.42 |
| HORVU0Hr1G021730.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G021740.4 | EnsemblPlantsGene:HORVU0Hr1G021740 | Gene3D:3.40.800.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | InterPro:Ureohydrolase_dom_sf | PANTHER:PTHR43497 | PANTHER:PTHR43497:SF2 |
| PFAM:PF00850 | SEG:seg | SUPFAM:SSF52768 | UniParc:UPI000B46848C | UniProt:A0A287E6R2 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchrUn:-:113178528..113194843
Molecular Weight (calculated)
8824.7 Da
IEP (calculated)
4.008
GRAVY (calculated)
0.308
Length
77 amino acids
Sequence
(BLAST)
(BLAST)
1: MIIDLDAHQG NGYEKDFAND GRVYILDMYN AGIYPFVSMK ILFSMFCSIL VGEEPDSPLS NAMITFNLFN LDLFRLF
001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE
Arabidopsis Description
HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.