Factsheet for Zm00001d010162_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010152_P002
Zm00001d010162_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08460.1	Zm00001d010152_P002	AT1G08460.1	21798944
AT1G08460.1	Zm00001d010162_P002	AT1G08460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010152_P002	Maize	cytosol	100.0	100.0
EES19606	Sorghum	cytosol	49.56	71.54
Os05t0440250-01	Rice	cytosol, nucleus, plastid	46.0	66.07
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	46.0	65.9
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	45.65	65.73
HORVU1Hr1G074110.1	Barley	cytosol	44.94	65.04
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	41.56	63.93
GSMUA_Achr6P19520_001	Banana	cytosol	40.14	58.55
VIT_06s0080g00210.t01	Wine grape	nucleus	35.35	57.18
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	37.48	55.67
Solyc06g074080.2.1	Tomato	cytosol	37.83	55.32
KRH26679	Soybean	cytosol	36.41	53.81
CDY22682	Canola	cytosol	36.59	53.37
AT1G08460.1	Thale cress	cytosol	35.52	53.05
Bra031628.1-P	Field mustard	cytosol	36.23	52.85
CDY06315	Canola	cytosol	35.7	52.07
Os05t0440300-01	Rice	cytosol, nucleus, plastid	31.79	45.32
Zm00001d042974_P001	Maize	mitochondrion	8.35	21.86
Zm00001d016381_P001	Maize	nucleus	14.39	19.85
Zm00001d006780_P011	Maize	cytosol	22.02	17.61
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	3.02	17.53
Zm00001d018864_P002	Maize	nucleus	18.12	16.48
Zm00001d053595_P004	Maize	nucleus	14.92	16.25
Zm00001d003813_P001	Maize	cytosol	12.79	16.11
Zm00001d050139_P001	Maize	nucleus	13.5	15.48
Zm00001d046388_P001	Maize	nucleus	14.56	15.44
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	4.97	14.29
Zm00001d046348_P003	Maize	plastid	8.17	12.07
Zm00001d018346_P001	Maize	mitochondrion	4.44	11.31
Zm00001d039202_P001	Maize	nucleus	3.2	10.84

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	UniProt:A0A1D6FPJ8	ProteinID:AQK93534.1	ProteinID:AQK93551.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:LRAT-like_dom	PFAM:PF00850	PFAM:PF04970	PRINTS:PR01270
PANTHER:PTHR10625	PANTHER:PTHR10625:SF121	SUPFAM:SSF52768	UniParc:UPI0008428242	InterPro:Ureohydrolase_dom_sf	EnsemblPlantsGene:Zm00001d010162
EnsemblPlants:Zm00001d010162_P002	EnsemblPlants:Zm00001d010162_T002	SEG:seg	:	:	:

Description

Histone deacetylase 8

Coordinates

chr8:-:102489032..102493406

Molecular Weight (calculated)

59158.1 Da

IEP (calculated)

5.164

GRAVY (calculated)

0.021

Length

563 amino acids

Sequence
(BLAST)

001: MASESSPPPA GAPPPGLGDK LAVFWDEGML AHDAGRGVFD SGRDPGFLDV LDQHPENADR VRNMVSILRR GPIAHFLSWH SGRPAHASEL LSFHSSEYIE
101: ELVQTNATGA KKKLCEGTFL NPGSWGAALL AAGTTLSSAK HILDGQGNLA YALVRPPGHH AQPDHADGYC FLNNAGLAVQ LALDSGRAKV AVVDIDVHYG
201: NGTAEGFYRT DTVLTMSLHM MHGSWGPSHP QSGSVDEIGE GKGLGYNLNI PLPNGSGDAG YEYAMNELVV PSIDKFQPQL LFLVVGQDSS AVLHGKNEIV
301: ITDCISLGNL VGIGNVVGIY VGDDKVIHFT RGRGQEVGTG TVVDIILVSS TPKRSNTPCP VCTDETSDSS TETNGVVSSC LSCFLAGGAL YRFEYAVNPA
401: LFLAKARGGT CTLAPSDPDD TVARRARYLL SNGFRCYNLF KSNCEDFAIY CKTGLLVAEQ GVVGQSGQAI SIIGGPLAAV VSTPFRLVTT NIYGMAVMAV
501: GVYCASRYAA DIGNRRDVVK MEVEDLTAGL ASGRICAVEN IAQLVAPEAE GPADATATAT LAA

Best Arabidopsis Sequence Match ( AT1G08460.2 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAVSS FFAQIRVDYL TEHLLRVLFA
301: IIVLVTSKSL MYAAPIWLCC DKSA

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.