CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0137500-00	Rice	nucleus	34.22	40.93
Zm00001d024768_P001	Maize	nucleus	39.33	40.77
GSMUA_Achr2P18390_001	Banana	nucleus	24.52	37.87
GSMUA_Achr11P...	Banana	nucleus	25.22	34.13
VIT_07s0005g02570.t01	Wine grape	nucleus	28.57	32.02
KRG96611	Soybean	nucleus	29.1	31.98
KRH33656	Soybean	nucleus	26.1	30.64
KRH68345	Soybean	endoplasmic reticulum, vacuole	29.1	30.5
KRH69145	Soybean	nucleus	25.93	30.37
EES00609	Sorghum	nucleus	30.86	30.07
EES02155	Sorghum	nucleus	27.16	27.02
EES02331	Sorghum	nucleus	26.1	27.01
EES03177	Sorghum	nucleus	15.52	26.51
EER98905	Sorghum	nucleus, plastid	13.93	24.16
KXG22547	Sorghum	nucleus	26.1	23.45
EER90124	Sorghum	nucleus	13.76	22.81
EER88729	Sorghum	nucleus	13.93	22.7
KXG35639	Sorghum	nucleus	11.64	22.37
OQU75809	Sorghum	nucleus	23.99	21.76
EES04642	Sorghum	nucleus	13.58	21.15
EES05866	Sorghum	nucleus	19.93	19.55

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1B6P6B9	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KXG21247
ProteinID:KXG21247	ProteinID:KXG21247.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF29
SMART:SM00774	EnsemblPlantsGene:SORBI_3009G034800	SUPFAM:SSF118290	UniParc:UPI0003C6666E	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:3182138..3188861

Molecular Weight (calculated)

58467.4 Da

IEP (calculated)

6.123

GRAVY (calculated)

-0.394

Length

567 amino acids

Sequence
(BLAST)

001: MDLVPKQQQQ QRSKEKQEEE EEMMMALAEH GDRPQAAAFG HGGGGGGGRR SEIKEVDFFS TAGGAARRRT DDDDDGDREE AAAGALARGC HNTTVNTALD
101: LLTTRAAAAA ATPAAVDGGE GTASGRDTEV PIVDVAATAA VEGELRQASE ENRRLRRMLE ELTRSYGALY HQLIQAQAQQ QQQQACSGGA ANPMLPAATT
201: TGVQFMDHAG RVAPAIAGEA APPAFSGDRG DSDDGSGGNG GEADQNDGMK TPERGENVDR SPAAAAEAPL RRARVSVRAR SEAPMISDGC QWRKYGQKMA
301: KGNPCPRAYY RCTMATGCPV RKQVQRCAED KAVLITTYEG THNHQLPPAA AAMAKTTSAA AAMLLSGPAV SRDVGALFAG HHVAAPAPLF QYHHPYASAM
401: AGATLSASAP FPTITLDLTH APSPGAAAAA AAAAGLLQQR QLMPPPVPTM TPFPMYGFTA AAGHRPVPPP QPPAATTLFG LDGSNRSALE TMTAAITNDP
501: NFTTVVAAAL STIMAGGAEP PVPRSGAADA GDGSNGSVGI EPATAAAAGA RENALHALLQ RLHDSRQ

Best Arabidopsis Sequence Match ( AT4G04450.2 )
(BLAST)

001: MVDDGLSVDM EEKRTKCENA QLREELKKAS EDNQRLKQML SQTTNNFNSL QMQLVAVMRQ QEDHHHLATT ENNDNVKNRH EVPEMVPRQF IDLGPHSDEV
101: SSEERTTVRS GSPPSLLEKS SSRQNGKRVL VREESPETES NGWRNPNKVP KHHASSSICG GNGSENASSK VIEQAAAEAT MRKARVSVRA RSEAPMLSDG
201: CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRTILITTYE GNHNHPLPPA AMNMASTTTA AASMLLSGST MSNQDGLMNP TNLLARTILP
301: CSSSMATISA SAPFPTITLD LTESPNGNNP TNNPLMQFSQ RSGLVELNQS VLPHMMGQAL YYNQQSKFSG LHMPSQPLNA GESVSAATAA IASNPNFAAA
401: LAAAITSIIN GSNNQQNGNN NNSNVTTSNV DNRQ

Arabidopsis Description

WRKY42WRKY transcription factor 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.