CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04270
EES10818
EES10999
EES15751
OQU83031

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	EES15751	AT1G21700.1	16055636
AT2G47620.1	OQU83031	AT1G21700.1	16055636
AT2G47620.1	EES10999	AT2G47620.1	16055636
AT2G47620.1	EES04270	AT5G52650.1	21798944
AT2G47620.1	EES10818	AT5G52650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0480300-01	Rice	cytosol	66.67	66.07
TraesCS2B01G356600.1	Wheat	nucleus	64.68	64.45
TraesCS2D01G337400.1	Wheat	nucleus	64.32	64.21
HORVU2Hr1G082880.12	Barley	nucleus	39.46	57.63
Zm00001d003284_P001	Maize	nucleus	70.27	44.22
GSMUA_Achr9P16230_001	Banana	nucleus	43.96	42.29
Bra004441.1-P	Field mustard	nucleus	35.32	38.13
CDX80122	Canola	nucleus	34.95	37.89
CDX83324	Canola	nucleus	33.33	37.6
CDX95728	Canola	nucleus	33.15	36.95
KRH53340	Soybean	nucleus	34.77	36.9
CDY66036	Canola	nucleus	34.41	36.8
VIT_17s0000g00990.t01	Wine grape	cytosol	36.58	36.06
AT2G47620.1	Thale cress	nucleus	33.15	35.94
KRH64580	Soybean	nucleus	33.69	35.48
Solyc03g097450.2.1	Tomato	nucleus	32.07	31.06
EES04686	Sorghum	plastid	23.78	26.51
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	20.36	14.56
EES15751	Sorghum	nucleus	19.46	13.95
EER93546	Sorghum	nucleus	21.08	12.87
EES10369	Sorghum	nucleus	20.54	12.62

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	UniProt:C5YAR6	ncoils:Coil	EnsemblPlants:EES10999
ProteinID:EES10999	ProteinID:EES10999.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf
InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF41	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	EnsemblPlantsGene:SORBI_3006G121300	SUPFAM:SSF46689	InterPro:SWIRM	unigene:Sbi.10727
UniParc:UPI0001A86F7E	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002446671.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:48786842..48790770

Molecular Weight (calculated)

61124.4 Da

IEP (calculated)

6.906

GRAVY (calculated)

-0.523

Length

555 amino acids

Sequence
(BLAST)

001: MSPPVAGAAA TSGDGSPREL YTIPASSGWF RWDGIHETER QALPEFFGGA GGAGFGTATR NPRIYREYRD FIIAKYREDP ARRLTFTEVR RALVGDVTLL
101: RKLFAFLDSS GLINFSASSS SSGPASRKQE VGVVVEAPVG LQVTPRPPAS YFAEEKRGAV GGEKENGFRL PPLTSYSDVF GEWAPGKAPI CGFCGEECNG
201: AKVETLQDGF KVCSKCSKSN NDNNKEEANK CPGDKKESME KSSGAWTDAE TLLLLEGVLK HGDDWDLIAQ HVRTKNKSEC IARLIQLPFG EHMLGTINGK
301: SASRLHINQA TDGKTNQHIM KEPSSHTTEM ADGMQIDGNE DSADKSVEEY PTKRRRLFSS MDATTSLMEQ LALLTTTASP DVVAAAADAA IKAFSNENPQ
401: AKKAFRLSER EYKTKAFGSN HVQQIDRKIG DKDVKMHGQP GSDKQEKKFI ANAYQLRAAV ATAVGVAAAR AKMLADQEER EMELLMASVI ETQLRKMQYK
501: IKHFEELESV MDQEYTTIQQ MKGSLMNEWL KVLEHAFRAG VSLPRDELLT KLFLN

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.