Factsheet for Bra004441.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003118.1-P
Bra004441.1-P
Bra016409.1-P
Bra017943.1-P
Bra029112.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	Bra016409.1-P	AT1G21700.1	16055636
AT2G47620.1	Bra017943.1-P	AT1G21700.1	16055636
AT2G47620.1	Bra004441.1-P	AT2G47620.1	16055636
AT2G47620.1	Bra003118.1-P	AT5G52650.1	21798944
AT2G47620.1	Bra029112.1-P	AT5G52650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80122	Canola	nucleus	96.5	96.88
AT2G47620.1	Thale cress	nucleus	64.79	65.04
KRH53340	Soybean	nucleus	44.94	44.17
KRH64580	Soybean	nucleus	44.36	43.26
VIT_17s0000g00990.t01	Wine grape	cytosol	45.72	41.74
Solyc03g097450.2.1	Tomato	nucleus	42.02	37.7
GSMUA_Achr9P16230_001	Banana	nucleus	40.47	36.05
EES10999	Sorghum	nucleus	38.13	35.32
TraesCS2B01G356600.1	Wheat	nucleus	36.97	34.11
Os04t0480300-01	Rice	cytosol	36.97	33.93
TraesCS2D01G337400.1	Wheat	nucleus	35.99	33.27
HORVU2Hr1G082880.12	Barley	nucleus	22.37	30.26
Bra021864.1-P	Field mustard	plastid	22.37	25.05
Zm00001d003284_P001	Maize	nucleus	35.99	20.98
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	20.62	17.18
Bra016409.1-P	Field mustard	nucleus	20.43	13.24
Bra011533.1-P	Field mustard	nucleus	21.21	11.7

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EnsemblPlantsGene:Bra004441	EnsemblPlants:Bra004441.1	EnsemblPlants:Bra004441.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	UniProt:M4CJQ7	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF41	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI0002547FD8	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT2G47620 (E=8e-155) ATSWI3A, CHB1 | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A); DNA binding

Coordinates

chrA05:-:139205..141293

Molecular Weight (calculated)

57354.6 Da

IEP (calculated)

4.565

GRAVY (calculated)

-0.460

Length

514 amino acids

Sequence
(BLAST)

001: MEVTTDRSSS KDAELELELE LYTIPAQSSW FVWDDIHEIE RREFTEFFSE SSITRTPKVY KEYRDFIINK YREDTSRRLT FTSIRKYLIG DVNLLRKVFL
101: FLEKWGLINF LQKSDDVVVE ESEAKIEQGT TPAGIRVTST PNSTRPVIAP PLVEERAEPA LTFPPLTSYS DVFKKPALVC GQPCPSHSAA FYEHNNKSNL
201: CDKCFKNGGE NNSAELIGSS AAAAWTEEET LLLLESVLKH GDDWELVAQS VSTKSRLDCI SKLIELPFGD FLMGSASGRL RSSVPTEDEH LSSPSNLVEQ
301: MKTDGQEHKE TETREENEED EPPAKRKRAA MMSDGDSYLM KQVAAMACKV GPSVTTAAAK AAIAALCDEA SCPKDIFETT SDYKNSAADR SVGDKDTSDI
401: EEQQEEKEGL EDLPVGLRMR VSVATALGAA AAHAKVLADQ EEREMELLVA SVIDQQLKKM KSKLKFLEEL EVIMDAEEKV MEGAKETIIQ ERISVLQSAF
501: SGGITKRWDH TCVK

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.