Factsheet for Solyc03g097450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g097450.2.1
Solyc06g060120.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	Solyc06g060120.2.1	AT1G21700.1	16055636
AT2G47620.1	Solyc03g097450.2.1	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g00990.t01	Wine grape	cytosol	46.25	47.07
KRH64580	Soybean	nucleus	42.93	46.68
KRH53340	Soybean	nucleus	41.71	45.7
CDX83324	Canola	nucleus	36.82	42.89
CDX95728	Canola	nucleus	37.17	42.77
AT2G47620.1	Thale cress	nucleus	37.7	42.19
Bra004441.1-P	Field mustard	nucleus	37.7	42.02
CDX80122	Canola	nucleus	37.35	41.8
CDY66036	Canola	nucleus	37.35	41.23
GSMUA_Achr9P16230_001	Banana	nucleus	34.55	34.32
Os04t0480300-01	Rice	cytosol	31.59	32.32
EES10999	Sorghum	nucleus	31.06	32.07
TraesCS2B01G356600.1	Wheat	nucleus	30.37	31.24
TraesCS2D01G337400.1	Wheat	nucleus	30.19	31.12
HORVU2Hr1G082880.12	Barley	nucleus	18.32	27.63
Solyc04g082760.2.1	Tomato	nucleus	20.59	24.13
Zm00001d003284_P001	Maize	nucleus	30.19	19.61
Solyc06g060120.2.1	Tomato	nucleus	19.72	14.29
Solyc01g109510.2.1	Tomato	nucleus	19.37	11.75

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	UniProt:K4BJG2
PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF41	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
InterPro:SWIRM	EnsemblPlantsGene:Solyc03g097450.2	EnsemblPlants:Solyc03g097450.2.1	UniParc:UPI0002768384	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chr3:-:59772720..59783768

Molecular Weight (calculated)

63931.2 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.525

Length

573 amino acids

Sequence
(BLAST)

001: MDASRLYKSS NELAHDLYTI PSYTSWFSWQ SIHEVERLSL REFFDCSSIT RTPRIYKEYR DYIITSYRQD PTRRLSFSDI RKSLVGDISV LHKVFTFLEK
101: WGLINFDPSN AETPAAIHAP AEEDKEDEKW RIRVEEGTPH GVRVVAAPHS LKPLAPVPSP VITGHRGAGK GRGGGTVDNI PKFSPMASYL DVYGELVGQQ
201: KEESVVCLSC KELCASGHYE YSKDASSNLC EKCFTSGNYD KNKFADEFKP IDGANPKVNW TEAETLLLLE SVLKHGDDWD LVTQNVKTKS KLDCISKLIQ
301: LPFGDLMLGS IHKKFNFLDK NREVRGVNQA QPAISESRET LGNQSHEQNQ ERQQNGNAEC ETPPLKKIRR APVSEDSSFL MKQVAHISGA VGPHIAASAA
401: EAAVTALCYE NQCSTDIFDG DDNGLVSIAD FSETERTSQV VGAEGEEKHV RSETEVEASQ RNSISLTLRT RAATATAIGA AAAHAKLLAN QEEREIEYLV
501: STLVEAQVKK LKRKMKHVEA LNLMMEKQHG QMKDLEESLV TERMDILQKI FSSGVSRWRD HASVKSQSST SSI

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.