CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16394
KRH17984
KRH53271
KRH53340
KRH64580
KRH64632

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	KRH16394	AT1G21700.1	16055636
AT2G47620.1	KRH17984	AT1G21700.1	16055636
AT2G47620.1	KRH53271	AT1G21700.1	16055636
AT2G47620.1	KRH64632	AT1G21700.1	16055636
AT2G47620.1	KRH53340	AT2G47620.1	16055636
AT2G47620.1	KRH64580	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53340	Soybean	nucleus	81.78	82.41
VIT_17s0000g00990.t01	Wine grape	cytosol	52.37	49.02
CDX95728	Canola	nucleus	44.78	47.39
AT2G47620.1	Thale cress	nucleus	45.35	46.68
CDX83324	Canola	nucleus	43.45	46.54
CDY66036	Canola	nucleus	45.54	46.24
CDX80122	Canola	nucleus	44.02	45.31
Bra004441.1-P	Field mustard	nucleus	43.26	44.36
Solyc03g097450.2.1	Tomato	nucleus	46.68	42.93
GSMUA_Achr9P16230_001	Banana	nucleus	39.66	36.22
TraesCS2B01G356600.1	Wheat	nucleus	36.62	34.65
Os04t0480300-01	Rice	cytosol	36.43	34.29
EES10999	Sorghum	nucleus	35.48	33.69
TraesCS2D01G337400.1	Wheat	nucleus	35.1	33.27
HORVU2Hr1G082880.12	Barley	nucleus	22.58	31.32
KRH60872	Soybean	nucleus	22.01	23.97
KRH51554	Soybean	nucleus	21.44	23.01
Zm00001d003284_P001	Maize	nucleus	34.16	20.41
KRH17984	Soybean	nucleus	22.58	15.56
KRH16394	Soybean	nucleus	22.58	15.34
KRH64632	Soybean	nucleus	22.39	15.03
KRH53271	Soybean	nucleus	21.82	14.65
KRH24488	Soybean	nucleus	20.11	10.43
KRH29482	Soybean	nucleus	19.92	10.03

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100790238	MapMan:12.4.2.1	EMBL:ACUP02002770	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G243100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	UniProt:I1JYZ3
InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	EnsemblPlants:KRH64580	ProteinID:KRH64580	ProteinID:KRH64580.1
PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF41	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
InterPro:SWIRM	UniParc:UPI000233A213	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:51117315..51121543

Molecular Weight (calculated)

58934.1 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.484

Length

527 amino acids

Sequence
(BLAST)

001: MEVAKDPNSQ ADSDSELELY TIPSSSRWFA WEEIHETERA AFKEYFDGSS ISRSPKIYKE YRDFIINKYR EEPSRRLTFS EVRKSLVGDV TFLHKVFLFL
101: EHWALINYGT AEDVEEDHCK VRFEEGAPSG IRVAATPNSL KPMLLPRNGK SAANATGASL KLPPLASYSD VYGDLIRQKE GNCALCAHQC GSGHYRCTQD
201: NFIICANCFK SGNYGEKRSA EDFVFSESSE NSVKHDTVWT EAETLLLLES VLKHGDDWEL VAQSVQTKTK LDCISKLIEL PFGELMLGPT HKNVNINGAN
301: GIMNNAKQVQ SSSSDNQEIS KTKDQTPELT NENEQNGDAV KESPSKRQRV AALSDSSSLL MNQVGLISNV VDPHITAAAA DAAVSALCDE DLCPREIFDV
401: EEDYSARALE GEEGLEMERS SLSEIPLTLR VRAATATALG AAAARAKLLA DQEDREIEHL VATIIEAQIE KMLRKVKHFD NLELLMEKEH AEMENLKDSI
501: LTERIDVLRR TFRSGVTRWK DYSYAKS

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.