CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29482	Soybean	nucleus	75.89	73.64
VIT_03s0063g02410.t01	Wine grape	nucleus	41.14	40.86
PGSC0003DMT400001865	Potato	nucleus	34.65	37.25
Bra011533.1-P	Field mustard	nucleus	34.06	37.12
AT4G34430.4	Thale cress	nucleus	36.02	37.12
GSMUA_Achr7P26780_001	Banana	nucleus	33.27	36.9
CDX75433	Canola	nucleus	33.76	36.68
CDY46250	Canola	nucleus	33.86	36.33
GSMUA_Achr3P30500_001	Banana	nucleus	33.56	35.97
CDX76281	Canola	nucleus	33.96	35.79
Solyc01g109510.2.1	Tomato	nucleus	33.27	35.77
Os04t0110300-02	Rice	plasma membrane	26.57	30.47
EES10369	Sorghum	nucleus	26.97	30.34
TraesCS4D01G053300.2	Wheat	nucleus	27.36	30.18
EER93546	Sorghum	nucleus	26.97	30.14
Zm00001d033825_P001	Maize	nucleus	26.77	30.12
Zm00001d013391_P006	Maize	nucleus	26.87	29.9
TraesCS4A01G261600.1	Wheat	nucleus	27.26	29.88
HORVU4Hr1G008820.1	Barley	nucleus	27.85	29.7
TraesCS4B01G053000.2	Wheat	nucleus	27.56	29.47
Zm00001d004521_P001	Maize	nucleus, plastid	22.44	27.18
KRH51554	Soybean	nucleus	11.81	24.44
KRH17984	Soybean	nucleus	17.72	23.53
KRH16394	Soybean	nucleus	17.72	23.2
KRH60872	Soybean	nucleus	11.02	23.14
KRH64632	Soybean	nucleus	17.82	23.06
KRH53271	Soybean	nucleus	17.72	22.93
KRH64580	Soybean	nucleus	10.43	20.11
KRH53340	Soybean	nucleus	10.33	20.08
Os03t0722100-01	Rice	cytosol, nucleus	9.94	18.88

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100786881	MapMan:12.4.2.1	Gene3D:3.30.60.90	EMBL:ACUP02007176
EnsemblPlantsGene:GLYMA_12G044200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872
InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	UniProt:K7LT00
ProteinID:KRH24487.1	EnsemblPlants:KRH24488	ProteinID:KRH24488	ProteinID:KRH24488.1	PFAM:PF00249	PFAM:PF00569
PFAM:PF04433	PFAM:PF16495	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293
PANTHER:PTHR12802	PANTHER:PTHR12802:SF39	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717
InterPro:SMARCC_C	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI000233D75A	InterPro:WH-like_DNA-bd_sf
InterPro:Znf_ZZ	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:3205315..3212425

Molecular Weight (calculated)

109934.0 Da

IEP (calculated)

4.806

GRAVY (calculated)

-0.682

Length

1016 amino acids

Sequence
(BLAST)

0001: MEEKRRDAAP SAADSPASEP ATSRRRAGAN KRKFGTLSAS GSSSAPSKRA ARDKASPLFP PAPHNGPLTR ARQTPNNLSA SSSAAASAPA AVKRSERAHP
0101: SAAESTALAE QLKKESEWET LEAAIEAEFE AIRSRGANAH VVPTHCGWFS WSCIHPIEKQ MLPSFFSGKT ENRTSDVYME IRNWIMKKFH SNPNVQIELK
0201: DMSQLNVGDS DARQEVMEFL DYWGLINFHP FPSMDSSVAT ASDDGEAEKS LLLEKLYHFE TLQLCPPVQR SSQMTPATTS GLFPESTIAE ELVKQEGPAV
0301: EMLEYHCNSC SADCSRKRYH CQKQADFDLC TDCFSNRRFG SGMSSLDFIL MEPAEVAGVN GGKWTDQETL LLLEALELYK ENWNEIAEHV GTKTKAQCIL
0401: HFVQMPIEDT FVDCDDDVDA GCKETADPVA TKSDSSMDKD ASECIENHTS DGIKDSEKTS KAEDLEVKVN QKETPKLQEG SDEKASEETS KSEDAVKVKI
0501: DQEADNDCAI NALKEAFAAV GYSPGPEGPS SFADVGNPVM ALATFLAHLV GSDAAVASAH SSIKSMTRNS PGTELAARCC FLLEDPPDSK KEPTSSERDS
0601: KSEGDQDEVN VNQDKSTLED KDLPTDHNNK KIESNALEDK GKPASADDGA SEIPISSKEQ AVVNNECGLD KCHDLNNAKL PNDQAPGTLH NSGGSTSKAE
0701: IPSSSDKAQE ETLIEEPCPS VKDRHVSDSL PSETSKDAEM VSDAIPSTKS KPQNPESTNP AHESLETTDS VMDVDGVSNS LPLEKIDSQP LITSKSSQCN
0801: GTEKDVEVMS PSNPVRSNSS AENGPNTGAG KDNADNGAKV EDDGTKTKQD SSFEKVKRAA VSTLAAAAVK AKLLANQEED QIRQLTSLLI EKQLHKLETK
0901: LAFFNDVENV VMRAREHVER SRHKLYHERA LIIASRLGIP PSSSRGVPPS IPTNRIPTNI ANSLPRPQMM MNPPRPLISR PAGTVATIQN PLTPSTAAGN
1001: SVRPSNQEKL SSVGTK

Best Arabidopsis Sequence Match ( AT4G34430.3 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.