CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76281	Canola	nucleus	70.86	69.61
AT4G34430.4	Thale cress	nucleus	55.86	53.65
CDX75433	Canola	nucleus	52.06	52.73
Solyc01g109510.2.1	Tomato	nucleus	34.74	34.81
PGSC0003DMT400001865	Potato	nucleus	34.0	34.07
KRH24488	Soybean	nucleus	36.33	33.86
GSMUA_Achr7P26780_001	Banana	nucleus	32.63	33.73
VIT_03s0063g02410.t01	Wine grape	nucleus	36.33	33.63
KRH29482	Soybean	nucleus	35.37	32.0
GSMUA_Achr3P30500_001	Banana	nucleus	31.89	31.86
EER93546	Sorghum	nucleus	29.36	30.58
Zm00001d033825_P001	Maize	nucleus	29.14	30.56
Zm00001d013391_P006	Maize	nucleus	29.46	30.56
TraesCS4D01G053300.2	Wheat	nucleus	29.04	29.86
TraesCS4A01G261600.1	Wheat	nucleus	28.93	29.56
TraesCS4B01G053000.2	Wheat	nucleus	29.14	29.05
HORVU4Hr1G008820.1	Barley	nucleus	29.04	28.86
EES10369	Sorghum	nucleus	27.03	28.35
Os04t0110300-02	Rice	plasma membrane	26.19	27.99
Zm00001d004521_P001	Maize	nucleus, plastid	23.65	26.7
CDY23721	Canola	plastid	11.3	23.31
CDY37705	Canola	plastid	10.88	22.44
CDX83324	Canola	nucleus	11.51	22.15
CDX95728	Canola	nucleus	11.62	22.09
CDY04665	Canola	cytosol, nucleus, vacuole	16.9	21.48
CDY08183	Canola	cytosol, nucleus, vacuole	16.79	21.31
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	17.0	21.13
CDX80122	Canola	nucleus	11.09	20.51
CDX96578	Canola	nucleus	16.79	20.03
CDY66036	Canola	nucleus	10.88	19.85
Os03t0722100-01	Rice	cytosol, nucleus	10.03	17.76

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	GO:A0A078I5W4	UniProt:A0A078I5W4
EnsemblPlants:CDY46250	ProteinID:CDY46250	ProteinID:CDY46250.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00083589001	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249	PFAM:PF00569	PFAM:PF04433	PFAM:PF16495
ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI0004EDBA47	InterPro:WH-like_DNA-bd_sf	InterPro:Znf_ZZ	SEG:seg

Description

BnaC03g66110DBnaC03g66110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5W4]

Coordinates

chrLK032656:-:54926..59236

Molecular Weight (calculated)

103424.0 Da

IEP (calculated)

4.913

GRAVY (calculated)

-0.703

Length

947 amino acids

Sequence
(BLAST)

001: MDEKRTLASA GDSPASEPAT RRRLKRKANA LGTSNSASAK RMLKREKAML ASFSPVHSGP LTRARQAPSS MPSVAGVKAE VLSAAVVVVG TDGEKLKEEE
101: ERDKAIREWE AKIEAEFEAV RSRESNVHVV PNHCGWFSWG KIHPLEERSL PSFFNGKLEG RTPEVYTEIR DWIMRKFHSD ANTQIEVKDL SELEVGDSEA
201: KQEVMEFLDY WGLINFHPFL SPDAIYFGFK QMRLPLLLFT SLVPQHKLRP SGLFPDPVAP DDLLKQEGPA VEYHCNSCSA DCSRKRYHCP TQADFDLCTE
301: CFDSGKFSSD MSSSDFILMD SAEAPGVGSG KWTDQETLLL LEGLEIFKEN FNEIAEHVAT KTKAQCMLHF LQMPIEDAFL DQFDYKVPST KDTTDSAVSK
401: DDKSVLKDAP EETENKNPVK EAETVKEAPE TEDDNEGNVP PESSKPGDAS EETSEVEAEQ KTLKVETVTD ERCKDDADEN VALKALTEAF EELGYRITPE
501: ASLSFADLGN PVMGLAAFLV RLAGSDVATA SARASIKSPK SNSGLLLATR HCFVLEDPLD NKKDSAESKS VDAVGNGDSA HKDEQPEGKS QKAEDVSLNA
601: NDREMTEADS GKENQDSVSE EKQPGSRTKK SARKPDAEGR KRSSNSVATE KSEEPADIIC TSLDKCSGKE LQEPLKNRNK LSSENKDASQ ATVSQLAPDA
701: SQPEASKDVE MKDMSQSQKD PQDMVKTVGE EIEQAKESAK DVLSMPDTSV AQQAVASASV PENGTDGCEN TKKEKGVSEE TKDKHNTDKL KRAAISALSA
801: ATVKAKHLAK QEEDHIRQLS GSLIEKQLRK LEAKLSIFND AESLTVRVKE QLERSRQRLY HERAQIIAAR LGAPSSMSSK ASLPTNRTAA NLANVAQRPP
901: MGMSFPRPPM PRPPGASPFS VPGSHVAATA MSGSSGPPQG SDNVSSV

Best Arabidopsis Sequence Match ( AT4G34430.3 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.